View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_92 (Length: 325)
Name: NF18178_low_92
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_92 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 132 - 272
Target Start/End: Complemental strand, 4843290 - 4843150
Alignment:
| Q |
132 |
tctttatcatattgaagtaaagatcacatcccgcttatgttgcttggtgtccatgtcaatcagctctgacacaaaggcctcttctttaaatttcttagtt |
231 |
Q |
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| T |
4843290 |
tctttatcatattgaagtaaagatcacatcccgcttatgttgcttggtgtccatgtcaatcagctccgacacaaaggcctcttctttaaatttcttagtt |
4843191 |
T |
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| Q |
232 |
cttacagctttattgaatattatatctctaactatgtactc |
272 |
Q |
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| T |
4843190 |
cttacagatttattgaatattatatctctaactatgtactc |
4843150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 4843427 - 4843328
Alignment:
| Q |
37 |
tctttgcacactctagcgcctttagcttccataaatatttccacaaacctgcattctcatccaaagatggttatcgattttgtctagtcattttctcttt |
136 |
Q |
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| T |
4843427 |
tctttgcacactctagcgcctttagcttccataaatatttcgacaaacctgcattttcatccaaagatggttatcgattttgtctagtcattttctcttt |
4843328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 5172372 - 5172468
Alignment:
| Q |
175 |
ttggtgtccatgtcaatcagctctgacacaaaggcctcttctttaaatttcttagttcttacagctttattgaatattatatctctaactatgtact |
271 |
Q |
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| T |
5172372 |
ttggtctccatgtcaatcagctctgacacaaaggcctcttctttaaatttcttagttcttacagatttattgaatattatatctctaaatatgtact |
5172468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 5194768 - 5194843
Alignment:
| Q |
61 |
gcttccataaatatttccacaaacctgcattctcatccaaagatggttatcgattttgtctagtcattttctcttt |
136 |
Q |
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| T |
5194768 |
gcttccataaatatttccacaaacctgcattctcatccaaaggtggttatggactttgtctagccatttcctcttt |
5194843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 5159202 - 5159260
Alignment:
| Q |
78 |
cacaaacctgcattctcatccaaagatggttatcgattttgtctagtcattttctcttt |
136 |
Q |
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| T |
5159202 |
cacaaacctgtattctcatccaaagatggttatcgattttgtctagtcattttctcttt |
5159260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 5181406 - 5181488
Alignment:
| Q |
54 |
gcctttagcttccataaatatttccacaaacctgcattctcatccaaagatggttatcgattttgtctagtcattttctcttt |
136 |
Q |
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| T |
5181406 |
gccttgagcttccataaatttttccacaaacctgcattctcatccaaaggtggttatggactttgactagccatttcctcttt |
5181488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Complemental strand, 4843132 - 4843098
Alignment:
| Q |
291 |
gcagatgctcaacatttgaaaaacttgaaaatgtt |
325 |
Q |
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| T |
4843132 |
gcagatgttcaacatttgaaaaacttgaaaatgtt |
4843098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 5159504 - 5159538
Alignment:
| Q |
291 |
gcagatgctcaacatttgaaaaacttgaaaatgtt |
325 |
Q |
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| T |
5159504 |
gcagatgttcaacatttgaaaaacttgaaaatgtt |
5159538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 5181739 - 5181773
Alignment:
| Q |
291 |
gcagatgctcaacatttgaaaaacttgaaaatgtt |
325 |
Q |
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| T |
5181739 |
gcagatgttcaacatttgaaaaacttgaaaatgtt |
5181773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 5195088 - 5195120
Alignment:
| Q |
240 |
tttattgaatattatatctctaactatgtactc |
272 |
Q |
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| T |
5195088 |
tttattgaaaattatatctctaactatgtactc |
5195120 |
T |
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