View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_94 (Length: 321)
Name: NF18178_low_94
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_94 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 15399316 - 15399006
Alignment:
| Q |
13 |
aatatattgcacataacgaatattatttgcccaatctgttaagcttgaagttgaaatagtacatgatttgagatgatacgaaacacattcaagaaccgat |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15399316 |
aatatattgcacataacgaatatcatttgcccaatctgttaagcttgaagttgaaatagtacatgatttgagatgatacgaaacacattcaagaaccgat |
15399217 |
T |
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| Q |
113 |
aatgggcatttccattccttggatgatgtggtcttcgaaaactgttaaagggatgaaaataacatttaaaaaatattcgnnnnnnnnncgaacaaatata |
212 |
Q |
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||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15399216 |
aatgggcatgtccattccttggtcgatgtggtcctcgaaaactgttaaagggatgaaaataacatttaaaaaatattcgaaaaaaaaacgaacaaatata |
15399117 |
T |
|
| Q |
213 |
ctactcaactattggcttcttcaac--aaaacnnnnnnnnnnnctaaacataccgttttaatataaagaatttgaagcttggggcaaagtcggagtagtt |
310 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15399116 |
ctactcaactattggcttcttcaacaaaaaaaaaaaaaaaaaactaaacataccgttttaatataaagaatttgaagcttggggcaaagtcggagtagtt |
15399017 |
T |
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| Q |
311 |
ttaccacatca |
321 |
Q |
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||||||||||| |
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| T |
15399016 |
ttaccacatca |
15399006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 15411103 - 15410793
Alignment:
| Q |
13 |
aatatattgcacataacgaatattatttgcccaatctgttaagcttgaagttgaaatagtacatgatttgagatgatacgaaacacattcaagaaccgat |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15411103 |
aatatattgcacataacgaatatcatttgcccaatctgttaagcttgaagttgaaatagtacatgatttgagatgatacgaaacacattcaagaaccgat |
15411004 |
T |
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| Q |
113 |
aatgggcatttccattccttggatgatgtggtcttcgaaaactgttaaagggatgaaaataacatttaaaaaatattcgnnnnnnnnncgaacaaatata |
212 |
Q |
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||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15411003 |
aatgggcatgtccattccttggtcgatgtggtcctcgaaaactgttaaagggatgaaaataacatttaaaaaatattcgaaaaaaaaacgaacaaatata |
15410904 |
T |
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| Q |
213 |
ctactcaactattggcttcttcaac--aaaacnnnnnnnnnnnctaaacataccgttttaatataaagaatttgaagcttggggcaaagtcggagtagtt |
310 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15410903 |
ctactcaactattggcttcttcaacaaaaaaaaaaaaaaaaaactaaacataccgttttaatataaagaatttgaagcttggggcaaagtcggagtagtt |
15410804 |
T |
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| Q |
311 |
ttaccacatca |
321 |
Q |
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||||||||||| |
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| T |
15410803 |
ttaccacatca |
15410793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 7818368 - 7818296
Alignment:
| Q |
66 |
aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga |
138 |
Q |
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| T |
7818368 |
aaatagtacatgatttgaggttagacgaaacacattcaagaaccaaaatttggtatttccattccttggatga |
7818296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 14435676 - 14435748
Alignment:
| Q |
66 |
aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga |
138 |
Q |
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| T |
14435676 |
aaattgtacatgatctgaggtgagacgaaacacattcaataaccgaatttggccatttccattccttggatga |
14435748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 702 - 774
Alignment:
| Q |
66 |
aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga |
138 |
Q |
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|||| ||||||||| |||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
702 |
aaattgtacatgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattccttggatga |
774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 14018692 - 14018623
Alignment:
| Q |
66 |
aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttgga |
135 |
Q |
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| T |
14018692 |
aaatagtacatgatctaagatgagacgaaacacattcaagatttgaaattgggcatttccattccttgga |
14018623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 24005042 - 24005105
Alignment:
| Q |
66 |
aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattc |
129 |
Q |
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|||||||||||||| |||| ||| | |||||||||||| ||||||| | ||||||||||||||| |
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| T |
24005042 |
aaatagtacatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccattc |
24005105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 25614342 - 25614278
Alignment:
| Q |
66 |
aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattcc |
130 |
Q |
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||||||||||||| |||| ||| |||||| |||||||||| || | | |||||||||||||||| |
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| T |
25614342 |
aaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc |
25614278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 37996673 - 37996745
Alignment:
| Q |
66 |
aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga |
138 |
Q |
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|||||||||||||| | || ||| |||||| ||| |||||||| | | |||||||||||||||||||||||| |
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| T |
37996673 |
aaatagtacatgatcttaggtgagacgaaatacactcaagaactgcaactgggcatttccattccttggatga |
37996745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 19316686 - 19316753
Alignment:
| Q |
71 |
gtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga |
138 |
Q |
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||||||||| | || ||| | ||||||||||||||||| || | |||||||||||||||||| ||||| |
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| T |
19316686 |
gtacatgatctaaggtgagatgaaacacattcaagaactgaaattgggcatttccattccttagatga |
19316753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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