View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18178_low_97 (Length: 314)
Name: NF18178_low_97
Description: NF18178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18178_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 52373310 - 52373010
Alignment:
| Q |
13 |
caaaggtacaattctctgctaatccataagaaggtgagatagaagaactttttaacccgaatggtgaaaaagtgtgaacaaattcaaccaccgagtctct |
112 |
Q |
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| T |
52373310 |
caaaggtacaattctctgctaatccataagaaggtgagatagaagaactttttaacccgaatggtgaaaaagtgtgaacaaattcaaccaccgagcctct |
52373211 |
T |
|
| Q |
113 |
gtaaatgggttcattgatgagtataaggttattaagatttgaaagattaatgggtaaagttcctttgtgaattcctccacgttttactacaagtggtagt |
212 |
Q |
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| T |
52373210 |
gtaaatgggttcattgatgagtataaggttattaagatttgaaagattaatgggtaaagttcctttgtgaattcctccacgttttactacaagtggtagt |
52373111 |
T |
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| Q |
213 |
gtaaaagaaggaacgggggtgcaagtagcattgaatttcgacattaactcaagccagagtcttggccgtttgatgaacgatgttggagaagtgagaacac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373110 |
gtaaaagaaggaacgggggtgcaagtagcattgaatttcgacattaactcaagccagagtcttggccgtttgatgaacgatgttggagaagtgagaacac |
52373011 |
T |
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| Q |
313 |
a |
313 |
Q |
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| T |
52373010 |
a |
52373010 |
T |
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