View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18179_high_10 (Length: 370)

Name: NF18179_high_10
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18179_high_10
NF18179_high_10
[»] chr6 (2 HSPs)
chr6 (127-291)||(34070935-34071101)
chr6 (4-66)||(34070813-34070875)
[»] chr3 (2 HSPs)
chr3 (128-178)||(30058666-30058716)
chr3 (128-178)||(30156931-30156981)
[»] chr4 (1 HSPs)
chr4 (127-173)||(41026655-41026701)
[»] chr1 (1 HSPs)
chr1 (136-178)||(38043190-38043232)
[»] chr2 (1 HSPs)
chr2 (135-180)||(5557884-5557929)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 34070935 - 34071101
Alignment:
Q  127 gagagaataattataatgtttgttattagagatttactattttataccataagtcttgacgctactttattgtctttcgagatttttcatgggatt--ta 224  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  34070935 gagagaataattataatgtttgttattagagatttgctattttataccataagtcttgacgctactttgttgtctttcgagatttttcatgggatttata 34071034  T
Q  225 tatatgttgaatgctttctttcttttgttttatttgtttatctatgtgatgtgatatttagcttatt 291  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  34071035 tatatgttgcatgctttctttcgtttgttttatttgtttatttatgtgatgtgatatttagcttatt 34071101  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 34070813 - 34070875
Alignment:
Q  4 agcagggccgtctttatggaactagaggcccgactctcaaagtaaatacatttctagaagaag 66  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34070813 agcagggccgtctctatggaactagagacccgactctcaaagtaaatacatttctagaagaag 34070875  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 30058666 - 30058716
Alignment:
Q  128 agagaataattataatgtttgttattagagatttactattttataccataa 178  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||| ||||    
T  30058666 agagaataattataatgtttattattagagctttgctattttatacgataa 30058716  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 30156931 - 30156981
Alignment:
Q  128 agagaataattataatgtttgttattagagatttactattttataccataa 178  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||| ||||    
T  30156931 agagaataattataatgtttatgattagaggtttactattttatacgataa 30156981  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 41026655 - 41026701
Alignment:
Q  127 gagagaataattataatgtttgttattagagatttactattttatac 173  Q
    ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  41026655 gagagaacaattataatgtttgtgattagagctttactatgttatac 41026701  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 38043190 - 38043232
Alignment:
Q  136 attataatgtttgttattagagatttactattttataccataa 178  Q
    |||||||||||||||||||||| |||| |||||||||| ||||    
T  38043190 attataatgtttgttattagagctttattattttatacaataa 38043232  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 5557884 - 5557929
Alignment:
Q  135 aattataatgtttgttattagagatttactattttataccataagt 180  Q
    ||||||||| |||||| |||||| ||||||||||||||| ||||||    
T  5557884 aattataatatttgttgttagagctttactattttatacgataagt 5557929  T

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