View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18179_high_12 (Length: 347)
Name: NF18179_high_12
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 57 - 296
Target Start/End: Complemental strand, 39887840 - 39887614
Alignment:
| Q |
57 |
tgtgtaatgaatgtagtatgggggtagaagtagatagataataaatgcaaagaaatgattgggcaatgagtaggatgaaaactaatggcacatgaatggc |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39887840 |
tgtgtaatgaatgtagtatgggggtagaagtagatagataataaatgcaaagaaatgattgggcaatgagtaggatgaaaactgatggcacatgaatggc |
39887741 |
T |
|
| Q |
157 |
aagtagcaagtgattagtatgatcatgtggagtggagtggagagggtctgacaacattgcgcgtagattgataaaaacaatgtagtagtaattaattaat |
256 |
Q |
| |
|
||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39887740 |
aagtagcaagtgatttgtatgatcat-----ggggagaggagagggtctgacaacattgcgcgtagattgataaaaacaatgtagtag--------taat |
39887654 |
T |
|
| Q |
257 |
taattaatgtggtagaatgtaactcatactactacgtaca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39887653 |
taattaatgtggtagaatgtaactcatactactacgtaca |
39887614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University