View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_high_15 (Length: 310)
Name: NF18179_high_15
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 43564646 - 43564363
Alignment:
| Q |
18 |
aagtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgtt |
117 |
Q |
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| T |
43564646 |
aagtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgtt |
43564547 |
T |
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| Q |
118 |
ataagggttcatctcaacacttttaggctattggaagagaaaacactaccaaatttagttgataaatttggttggtgcacttgggatgctttctatttaa |
217 |
Q |
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| T |
43564546 |
ataagggttcatctcaacacttttaggctattggaagagaaaacactaccaaatttagttgataaatttggttggtgcacttgggatgctttctatttaa |
43564447 |
T |
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| Q |
218 |
ctgttaatcctattggtgtttttcatggtcttgagggtttttctaaaggcggagttgaaccgaggtttgttatcattgatgatg |
301 |
Q |
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| T |
43564446 |
ctgttaatcctattggtgtttttcatggtcttgagggtttttctaaaggcggagttgaaccgaggtttgttatcattgatgatg |
43564363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 36432600 - 36432318
Alignment:
| Q |
19 |
agtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgtta |
118 |
Q |
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| T |
36432600 |
agtggttcaacaaaggtgaaagcattgagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgctt |
36432501 |
T |
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| Q |
119 |
taagggttcatctcaacacttttaggctattggaagagaaaacactaccaaatttagttgataaatttggttggtgcacttgggatgctttctatttaac |
218 |
Q |
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| T |
36432500 |
tgagggttcatctcaacacttttaggctactggaagagaaaacacttccaaatttggttgataaatttggttggtgtacatgggatgctttttatttgac |
36432401 |
T |
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| Q |
219 |
tgttaatcctattggtgtttttcatggtcttgagggtttttctaaaggcggagttgaaccgaggtttgttatcattgatgatg |
301 |
Q |
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||| |||||||||||||||||||||||||| || | ||| || |||||||| ||||| || || |||||| ||||||| |||| |
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| T |
36432400 |
tgtgaatcctattggtgtttttcatggtctcgatgatttctcaaaaggcggcgttgagccaagatttgttgtcattgacgatg |
36432318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 46 - 301
Target Start/End: Original strand, 43973984 - 43974239
Alignment:
| Q |
46 |
agtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgttataagggttcatctcaacacttttaggc |
145 |
Q |
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|||||| |||| ||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||| |||||||||| |
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| T |
43973984 |
agtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgctattagggttcatctcaatacttttaggc |
43974083 |
T |
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| Q |
146 |
tattggaagagaaaacactaccaaatttagttgataaatttggttggtgcacttgggatgctttctatttaactgttaatcctattggtgtttttcatgg |
245 |
Q |
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| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
43974084 |
ttttggaagagaaaacacttccaaatttggttgataaatttggttggtgtacatgggatgctttctatttaagtgttggtcctattggtgtttttcatgg |
43974183 |
T |
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| Q |
246 |
tcttgagggtttttctaaaggcggagttgaaccgaggtttgttatcattgatgatg |
301 |
Q |
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|||||| | |||| ||| |||| |||||||| |||||||||||||||||||||| |
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| T |
43974184 |
tcttgatgagtttttgaaaagcggtgttgaacctaggtttgttatcattgatgatg |
43974239 |
T |
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