View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_high_18 (Length: 271)
Name: NF18179_high_18
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 19644688 - 19644431
Alignment:
| Q |
16 |
acacactttggtgttctaaatgcattcttcatcatcttcaatagtgttttctaacactcatcgttactattctcaatttttgtttattcatcatctatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19644688 |
acacactttggtgttctaaatgcattcttcatcatcttcaatagtgttttctaacactcatcgttactattctcaacttttgtttattcatcatctatgt |
19644589 |
T |
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| Q |
116 |
aacaagacattgaatcggttttttgtccttcattttg-ttaaggatc-tttattcattcatcattcatcgtaagactctctaattactatttcaagggac |
213 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
19644588 |
aataagacattgaatcggttttttgtccttcattttgtttaaggttcttttattcattcgttattcatcgtaagactctctaattactatttcaagggac |
19644489 |
T |
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| Q |
214 |
ttctctattaacttcactatcattatagtttagtaacataatatatgtgtttgttcgc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19644488 |
ttctctattaacttcactatcattatagtttagtaacataatatatgagtttgttcgc |
19644431 |
T |
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