View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_high_27 (Length: 203)
Name: NF18179_high_27
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 9e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 32898978 - 32898807
Alignment:
| Q |
18 |
ataattaaggtgactcgttcacttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcnnnnnnnncatataaatgactttat |
117 |
Q |
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| T |
32898978 |
ataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaaga-catatgaatgactttat |
32898880 |
T |
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| Q |
118 |
acatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttcattt |
190 |
Q |
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| T |
32898879 |
acacattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttcattt |
32898807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 32880106 - 32879935
Alignment:
| Q |
18 |
ataattaaggtgactcgttcacttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcnnnnnnnncatataaatgactttat |
117 |
Q |
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| T |
32880106 |
ataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaaga-catatgaatgactttat |
32880008 |
T |
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| Q |
118 |
acatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttcattt |
190 |
Q |
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| T |
32880007 |
acatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtttattt |
32879935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 32884934 - 32884768
Alignment:
| Q |
18 |
ataattaaggtgactcgttcacttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcnnnnnnnncatataaatgactttat |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||| |||||| |
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| T |
32884934 |
ataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattctatat-aaaaaagacatatgaatgcctttat |
32884837 |
T |
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| Q |
118 |
acatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttcattt |
190 |
Q |
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||||||||||||||||||| | | ||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
32884836 |
acatattcttctaaatcatgt----ttcatatatctttgtcaagtggagtgtacatccattcgtggttcattt |
32884768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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