View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_high_4 (Length: 435)
Name: NF18179_high_4
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 47212819 - 47212414
Alignment:
| Q |
13 |
atgaacaagatccaaccagagaagaaaaagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47212819 |
atgaacaagatccaaccagagaagaaaaagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagt |
47212720 |
T |
|
| Q |
113 |
tgacacaaactgttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47212719 |
tgacacaaactgttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgc |
47212620 |
T |
|
| Q |
213 |
tgacacaaaaatacaaaccataacaactacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47212619 |
tgacacaaaaatacaaaccataacaactacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatc |
47212520 |
T |
|
| Q |
313 |
accatttgtgacaagaacatttgaacaccggcttcgagtaatagctttcgacgaccaagtttatccactgaatatattgaaactatagttgagataacat |
412 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47212519 |
accatttgtgacaacaacatttgaacaccagcttccagtaatagctttcgacgaccaagtttatccactgaatatattgaaactatagttgagatgacat |
47212420 |
T |
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| Q |
413 |
tgattg |
418 |
Q |
| |
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|||||| |
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| T |
47212419 |
tgattg |
47212414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 47186077 - 47185995
Alignment:
| Q |
127 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
209 |
Q |
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| T |
47186077 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
47185995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 47198616 - 47198534
Alignment:
| Q |
127 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
209 |
Q |
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| T |
47198616 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
47198534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 377
Target Start/End: Original strand, 748487 - 748836
Alignment:
| Q |
28 |
ccagagaagaaaaagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagttgacacaaactgtta |
127 |
Q |
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||||||||||| |||||||| ||||||||||| | ||| | ||| || || ||||| || ||||||||| ||||| | | ||||||||||||||| | |
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| T |
748487 |
ccagagaagaacaagaagattccaaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtga |
748586 |
T |
|
| Q |
128 |
cactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgctgacacaaaaataca |
227 |
Q |
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|||||||||| || || |||||||| ||||||||| |||||||||||||||||||| | || |||||||| ||||| ||||| || ||||| ||| | || |
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| T |
748587 |
cactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagaccaagcaaaggcagacacgaaagtgca |
748686 |
T |
|
| Q |
228 |
aaccataacaactacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatcaccatttgtgacaag |
327 |
Q |
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|||| | ||| |||| |||||| |||||||| || || ||||||||||| |||| ||||| || || | ||||||||||| ||||| |||||| |
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| T |
748687 |
taccaagataacaacaaatattgcatagccttttgaaagatcgtcagaatgatcagtcaccttgatcccaagaatgattgctatcacaatttgagacaag |
748786 |
T |
|
| Q |
328 |
aacatttgaacaccggcttcgagtaatagctttcgacgaccaagtttatc |
377 |
Q |
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|||||||| ||||||||||| | | || | | ||||||||||||||||| |
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| T |
748787 |
aacatttgtacaccggcttccaacagtaacatacgacgaccaagtttatc |
748836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 41414021 - 41414096
Alignment:
| Q |
129 |
actttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccat |
204 |
Q |
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|||||| ||||| ||||| | |||| ||||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
41414021 |
actttgccctgctgaacggatttctaatggaaatatctcacttggaattgtccaaccaagaggaccccatgaccat |
41414096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 36202786 - 36202701
Alignment:
| Q |
125 |
ttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaat |
210 |
Q |
| |
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|||||||||| ||||||||||| |||| | ||| || |||||||| |||| | |||| |||| |||||||||||||| |||||| |
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| T |
36202786 |
ttacactttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaat |
36202701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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