View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_10 (Length: 383)
Name: NF18179_low_10
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 12876599 - 12876926
Alignment:
| Q |
16 |
gcaagatcaagagctagtaagcatataatttgagcnnnnnnnncttcttattcgttcattgtttccattaatcttttctaaagcatcctcaacaattacc |
115 |
Q |
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| T |
12876599 |
gcaagatcaagagctagtaagcata--atttgagcttttt----ttcttattcgttcattgttttcattaatcttttctaaagcatcctcaacaattacc |
12876692 |
T |
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| Q |
116 |
gttacatttannnnnnnactaaaaaagacacatttttcctattcattcattgtttgatttttctttgcattaatatttattccctttccaactcaattta |
215 |
Q |
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||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12876693 |
gtttcatttatttctttactaaaaaagacacatttt-cctattcattcattgtttgatttttctttgcattaatatttattccctttccaactcaattta |
12876791 |
T |
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| Q |
216 |
cttcaatcatggtggtgtattcaccttgtttttattgttgaatgaagtttgcttgttaaaagaaagataaaaaaccatttttcaatccaaattttttaca |
315 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12876792 |
cttcaatcatggtggtgtattaaccttgtttttattgttgaatgaagtttgcttgttaaaagaaagataaaaaaccatttttcaaaccaaattttttacc |
12876891 |
T |
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| Q |
316 |
cttcnnnnnnntcaagcatgtatgatttgttacat |
350 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
12876892 |
cttcaaaaaaatcaagcatgtatgatttgttacat |
12876926 |
T |
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