View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_11 (Length: 377)
Name: NF18179_low_11
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 27848561 - 27848210
Alignment:
| Q |
2 |
atatccaccgtctcctccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccacca |
101 |
Q |
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| T |
27848561 |
atatccaccgtctcctccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccacca |
27848462 |
T |
|
| Q |
102 |
cttccttcacacgggtaaccagggacacattcaccgcctcctaccccaggaacaaatccaccacctcctacacccgggtaaccaggaacaaatccaccac |
201 |
Q |
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| T |
27848461 |
cttccttcacacgggtaacctgggacacattcaccgcctcctaccccaggaacaaatccaccacctcctacacccgggtaaccaggaacaaatccaccac |
27848362 |
T |
|
| Q |
202 |
ttcccgtacctggtccatcaggaccatatccaccgcctgcttcgnnnnnnnnnnnnnnnnnnnnnngagaaacaccatatccatcacctccttcgcctgg |
301 |
Q |
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| T |
27848361 |
ttcccgtacctggtccatcaggaccatatccaccgcctgcttcg------cctcctcctcctcctcgagaaacaccatatccatcacctccttcgcctgg |
27848268 |
T |
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| Q |
302 |
tccggcatatccatatcctccacctacatccccaacaatgagttttctggcagcagaa |
359 |
Q |
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| T |
27848267 |
tccggcatatccatatcctccacctacatccccaacaatgagttttctggcagcagaa |
27848210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 27848609 - 27848442
Alignment:
| Q |
17 |
tccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccaccgtcttctccaccaggaacatgtccaccacttccttcacacggg |
116 |
Q |
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| T |
27848609 |
tccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccaccgtctcctccaccaggaacatgtccaccaactccttcacccggt |
27848510 |
T |
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| Q |
117 |
taaccagggacacattcaccgcctcctaccccaggaacaaatccaccacctcctacacccgggtaacc |
184 |
Q |
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| T |
27848509 |
ccaccaggaacatatccaccgtcttctccaccaggaacatgtccaccacttccttcacacgggtaacc |
27848442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 27848609 - 27848490
Alignment:
| Q |
80 |
tccaccaggaacatgtccaccacttccttcacacgggtaaccagggacacattcaccgcctcctaccccaggaacaaatccaccacctcctacacccggg |
179 |
Q |
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|||||||||||||||||||||| |||||||| ||| |||||| ||| || ||||| ||||| | ||||||||| ||||||| ||||| ||||||| |
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| T |
27848609 |
tccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccaccgtctcctccaccaggaacatgtccaccaactccttcacccggt |
27848510 |
T |
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| Q |
180 |
taaccaggaacaaatccacc |
199 |
Q |
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| T |
27848509 |
ccaccaggaacatatccacc |
27848490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 27848646 - 27848589
Alignment:
| Q |
13 |
ctcctccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc |
73 |
Q |
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||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||||| |
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| T |
27848646 |
ctcctccaccaggaatat---caccacctccttcacccggtccaccaggaacatgtccacc |
27848589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 27848715 - 27848658
Alignment:
| Q |
13 |
ctcctccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc |
73 |
Q |
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||||| |||||||||||| ||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
27848715 |
ctccttcaccaggaacat---caccacctccttcgcccggtccaccaggaacatacccacc |
27848658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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