View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18179_low_13 (Length: 355)

Name: NF18179_low_13
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18179_low_13
NF18179_low_13
[»] chr8 (5 HSPs)
chr8 (10-337)||(18314418-18314744)
chr8 (240-337)||(18318652-18318749)
chr8 (166-274)||(17635591-17635699)
chr8 (180-274)||(17642884-17642978)
chr8 (230-271)||(34935986-34936027)
[»] chr5 (5 HSPs)
chr5 (10-124)||(9849364-9849478)
chr5 (39-124)||(9844638-9844723)
chr5 (10-44)||(9843238-9843272)
chr5 (253-334)||(28695545-28695626)
chr5 (10-65)||(40280424-40280480)
[»] chr1 (3 HSPs)
chr1 (10-124)||(25189650-25189764)
chr1 (218-274)||(19467418-19467474)
chr1 (215-278)||(7555207-7555270)
[»] chr7 (6 HSPs)
chr7 (10-124)||(8368389-8368505)
chr7 (184-274)||(10169003-10169093)
chr7 (184-274)||(10176528-10176618)
chr7 (223-274)||(10615726-10615777)
chr7 (242-287)||(7977873-7977918)
chr7 (159-200)||(15091527-15091568)
[»] scaffold0655 (1 HSPs)
scaffold0655 (55-124)||(94-163)
[»] chr4 (7 HSPs)
chr4 (215-338)||(8186343-8186466)
chr4 (180-274)||(553772-553866)
chr4 (10-82)||(23872037-23872109)
chr4 (217-274)||(661871-661928)
chr4 (245-286)||(1755554-1755595)
chr4 (249-286)||(7225179-7225216)
chr4 (233-270)||(55907677-55907714)
[»] scaffold1155 (1 HSPs)
scaffold1155 (166-270)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (166-270)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (166-270)||(30584-30688)
[»] chr3 (1 HSPs)
chr3 (165-278)||(51120590-51120703)
[»] chr6 (1 HSPs)
chr6 (223-274)||(6593923-6593974)
[»] chr2 (1 HSPs)
chr2 (233-271)||(1036613-1036651)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 18314418 - 18314744
Alignment:
Q  10 agaagcataggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgttttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18314418 agaagcataggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaggattttcatctttctgttttt 18314517  T
Q  110 cttcgtgatgcaatacctcacgtgctatgaagatgacctcaacacgatcctctgtcaaatctctcttttcccatagaaactcaaatcactcgatctctcc 209  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  18314518 cttcgtgatgcaatacctcacgtgctatgaa-atgacctcaacacgatcctctgtcaaatctctcttttcccattgaaactcaaatgactcgatctctcc 18314616  T
Q  210 tgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggca 309  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||    
T  18314617 tgtcaacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggca 18314716  T
Q  310 ctgatctcttcctcattgctgattgttt 337  Q
    ||||||||||||||||||||||||||||    
T  18314717 ctgatctcttcctcattgctgattgttt 18314744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 18318652 - 18318749
Alignment:
Q  240 cgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattgttt 337  Q
    ||||||||||   |||||||||||||||||||||||||| ||||||||  | |||||| |||  || ||||| |||||||||||||||| ||||||||    
T  18318652 cgagttttctgcaaaaatattacaactttgacctcactcacatgttctggccttcaatgtctcaatagcacttatctcttcctcattgcagattgttt 18318749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 17635591 - 17635699
Alignment:
Q  166 aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac 265  Q
    ||||||||| ||| |||| |||||||| ||||||| |||| |||   | || |||||||||  | ||||| ||||||| |||||| |  |||||||||||    
T  17635591 aaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaac 17635690  T
Q  266 tttgacctc 274  Q
    |||||||||    
T  17635691 tttgacctc 17635699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 17642884 - 17642978
Alignment:
Q  180 ccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 274  Q
    |||| |||||||| ||||||| ||||||||   |  | |||||||||| | ||||| |||| || |||||| || ||||||||||||||||||||    
T  17642884 ccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctc 17642978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 34935986 - 34936027
Alignment:
Q  230 aaatggcttacgagttttctctcaaaatattacaactttgac 271  Q
    |||||| || ||||||||||| ||||||||||||||||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgac 34936027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 9849364 - 9849478
Alignment:
Q  10 agaagcataggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||||| |||||||||||||||||||||    
T  9849364 agaagcataggataataactctgtaactaactaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctttctgttttt 9849463  T
Q  110 cttcgtgatgcaata 124  Q
    |||||||||||||||    
T  9849464 cttcgtgatgcaata 9849478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 9844638 - 9844723
Alignment:
Q  39 actaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgatgcaata 124  Q
    |||||||||||||||| |||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9844638 actaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctttctgtttttcttcgtgatgcaata 9844723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 9843238 - 9843272
Alignment:
Q  10 agaagcataggataataactctgtaactaactaaa 44  Q
    |||||||||||||||||||||||||||||||||||    
T  9843238 agaagcataggataataactctgtaactaactaaa 9843272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 28695545 - 28695626
Alignment:
Q  253 aaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgatctcttcctcattgctgattg 334  Q
    |||| ||||||||| ||||||| ||| | ||||| ||| ||  | |||| ||| |||||||||||||| |||||||||||||    
T  28695545 aaaacattacaactatgacctctctcacttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattg 28695626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 40280480 - 40280424
Alignment:
Q  10 agaagcataggataataactctgtaactaactaaa-ctattctaagctagttacttg 65  Q
    ||||||||||||  || |||| ||||||||||||| ||| |||||||||||||||||    
T  40280480 agaagcataggaacattactcagtaactaactaaaactaatctaagctagttacttg 40280424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 25189650 - 25189764
Alignment:
Q  10 agaagcataggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||||||||| |||||||||||||||||||||    
T  25189650 agaagcataggataataactctgtaactaactaaactattctaagttagttatttgtcatacaaactattacactttaggattttcatctttctgttttt 25189749  T
Q  110 cttcgtgatgcaata 124  Q
    |||||||||||||||    
T  25189750 cttcgtgatgcaata 25189764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 19467418 - 19467474
Alignment:
Q  218 caccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 274  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  19467418 caccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctc 19467474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 7555270 - 7555207
Alignment:
Q  215 acccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactc 278  Q
    ||||||||| || |||| ||| || |||| |||||| ||||||||||||||||| |||||||||    
T  7555270 acccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactc 7555207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 8368389 - 8368505
Alignment:
Q  10 agaagcataggataataactctgtaactaacta--aactattctaagctagttacttgtcagacaagctattacactttaagattttcatctttctgttt 107  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  8368389 agaagcataggataataactctgtaactaactataaactattctaagctagttactagccagacaagctattacactttaggattttcatctttctgttt 8368488  T
Q  108 ttcttcgtgatgcaata 124  Q
    |||||||||||||||||    
T  8368489 ttcttcgtgatgcaata 8368505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 10169003 - 10169093
Alignment:
Q  184 agaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 274  Q
    ||||||||| |||||||||| | ||||  | |  |||||||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  10169003 agaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctc 10169093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 10176528 - 10176618
Alignment:
Q  184 agaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 274  Q
    ||||||||| |||||||||| | ||||  | |  |||||||||||||||||| || |||||||||||||||||||||| ||||||||||||    
T  10176528 agaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctc 10176618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 10615777 - 10615726
Alignment:
Q  223 ttcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 274  Q
    ||||||||||||| ||||||| |||||| ||||| |||||||||||||||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctc 10615726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 7977918 - 7977873
Alignment:
Q  242 agttttctctcaaaatattacaactttgacctcactctcatgttct 287  Q
    ||||||||| ||||||||| |||||||||||||||||  |||||||    
T  7977918 agttttctcccaaaatattgcaactttgacctcactcaaatgttct 7977873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 15091527 - 15091568
Alignment:
Q  159 ctctgtcaaatctctcttttcccatagaaactcaaatcactc 200  Q
    ||||||||||||||  ||||||||| ||||||||||||||||    
T  15091527 ctctgtcaaatctcaattttcccattgaaactcaaatcactc 15091568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 94 - 163
Alignment:
Q  55 ctagttacttgtcagacaagctattacactttaagattttcatctttctgtttttcttcgtgatgcaata 124  Q
    ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  94 ctagttatttgtcatacaaactattacactttaggattttcatctttctgtttttcttcgtgatgcaata 163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 338
Target Start/End: Original strand, 8186343 - 8186466
Alignment:
Q  215 acccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttctcacgttcaatctcttcatggcactgat 314  Q
    |||||||||||| |||||||| || |||||| |||| | ||||||||||||||||||||||||| |||||||  || || ||||| |  || |||||||     
T  8186343 acccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgac 8186442  T
Q  315 ctcttcctcattgctgattgtttt 338  Q
     |||||||||| || |||||||||    
T  8186443 atcttcctcatcgccgattgtttt 8186466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 553866 - 553772
Alignment:
Q  180 ccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 274  Q
    |||| ||| |||| ||||||||||||||||     ||||||||||||||||||||| || |||| |||||| ||||| |||||||||||||||||    
T  553866 ccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc 553772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 23872037 - 23872109
Alignment:
Q  10 agaagcataggataataactctgtaactaactaaactattctaagctagttacttgtcagacaagctattaca 82  Q
    ||||| ||||||| | ||||| |||||||||||||||| ||||||||||||||||||  | ||||||||||||    
T  23872037 agaagtataggattacaactcagtaactaactaaactaatctaagctagttacttgtacggcaagctattaca 23872109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 661928 - 661871
Alignment:
Q  217 ccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 274  Q
    ||||||||||||| ||||| || |||| |||||| ||| ||||||||||||| |||||    
T  661928 ccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctc 661871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 1755595 - 1755554
Alignment:
Q  245 tttctctcaaaatattacaactttgacctcactctcatgttc 286  Q
    |||||||||||| ||||||||||||||||| ||| |||||||    
T  1755595 tttctctcaaaagattacaactttgacctctctcacatgttc 1755554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 7225179 - 7225216
Alignment:
Q  249 tctcaaaatattacaactttgacctcactctcatgttc 286  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  7225179 tctcaaaatattacaactttgacctctctcacatgttc 7225216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 55907677 - 55907714
Alignment:
Q  233 tggcttacgagttttctctcaaaatattacaactttga 270  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  55907677 tggcttacgagctttctcccaaaatattacaactttga 55907714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  166 aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac 265  Q
    ||||||||| |||||||| ||| |||| ||||||| |||||||||  | |||||  ||||||||| |||| || |||||||| || ||||||||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  266 tttga 270  Q
    |||||    
T  1921 tttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  166 aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac 265  Q
    ||||||||| |||||||| ||| |||| ||||||| |||||||||  | |||||  ||||||||| |||| || |||||||| || ||||||||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  266 tttga 270  Q
    |||||    
T  8295 tttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  166 aaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaac 265  Q
    ||||||||| |||||||| ||| |||| ||||||| |||||||||  | |||||  ||||||||| |||| || |||||||| || ||||||||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  266 tttga 270  Q
    |||||    
T  30684 tttga 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 51120590 - 51120703
Alignment:
Q  165 caaatctctcttttcccatagaaactcaaatcactcgatctctcctgtctacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaa 264  Q
    ||||| ||||||||||||| ||||||   ||||||| ||||||||     |||||||| ||  || ||||| || |||| ||||||||||||| ||||||    
T  51120590 caaatatctcttttcccattgaaacttcgatcactccatctctccaacacacccaccaatcttgccaatggattgcgagctttctctcaaaatgttacaa 51120689  T
Q  265 ctttgacctcactc 278  Q
    ||||||| ||||||    
T  51120690 ctttgacttcactc 51120703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 6593923 - 6593974
Alignment:
Q  223 ttcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctc 274  Q
    ||||| ||||||| || ||||||||||| ||||| |||||||||||||||||    
T  6593923 ttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctc 6593974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 1036613 - 1036651
Alignment:
Q  233 tggcttacgagttttctctcaaaatattacaactttgac 271  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  1036613 tggcttacgagctttctcccaaaatattacaactttgac 1036651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University