View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18179_low_15 (Length: 339)

Name: NF18179_low_15
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18179_low_15
NF18179_low_15
[»] chr2 (3 HSPs)
chr2 (3-321)||(18252528-18252837)
chr2 (3-321)||(18256731-18257040)
chr2 (51-318)||(18245475-18245730)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 18252528 - 18252837
Alignment:
Q  3 atcaatccaaattattcaaaaggaatatcagaaacatatatttccactattccacactctatatataatagaaccaatttgaccacaaatacacacaaaa 102  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  18252528 atcaattcaaattattcaaaaggaatataaaaaacatatatttccactattccactctctatatataatagaaccaatttgaccacaaatacacacacaa 18252627  T
Q  103 tataacattatcaacaataacaacaaaaacatgaagatgattctaacaatcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatt 202  Q
    ||||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18252628 tataacattatcaacaataaca---------tgaagatgattctaactatcttcttcattttttctcttctttcccttgctcatgcatccgtagtagatt 18252718  T
Q  203 tctgcgtagcagattacaatgcgccaaatggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagc 302  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18252719 tctgcgtagcagattacaatgcaccaaatggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagc 18252818  T
Q  303 cgcagctggaaacaccaca 321  Q
    |||||||||||||||||||    
T  18252819 cgcagctggaaacaccaca 18252837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 18257040 - 18256731
Alignment:
Q  3 atcaatccaaattattcaaaaggaatatcagaaacatatatttccactattccacactctatatataatagaaccaatttgaccacaaatacacacaaaa 102  Q
    |||||| ||||||||||| || |||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  18257040 atcaattcaaattattcagaaagaatattaaaaatatatatttccactattccactctctatatataatagaaccaatttgaccacaaatacacacacaa 18256941  T
Q  103 tataacattatcaacaataacaacaaaaacatgaagatgattctaacaatcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatt 202  Q
    ||||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18256940 tataacattatcaacaataaca---------tgaagatgattctaactatcttcttcattttttctcttctttcccttgctcatgcatccgtagtagatt 18256850  T
Q  203 tctgcgtagcagattacaatgcgccaaatggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagc 302  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18256849 tctgcgtagcagattacaatgcaccaaatggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagc 18256750  T
Q  303 cgcagctggaaacaccaca 321  Q
    |||||||||||||||||||    
T  18256749 cgcagctggaaacaccaca 18256731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 51 - 318
Target Start/End: Original strand, 18245475 - 18245730
Alignment:
Q  51 attccacactctatatataatagaaccaatttgaccacaaatacacacaaaatataacattatcaacaataacaacaaaaacatgaagatgattctaaca 150  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||  ||||| ||||||||| |            ||||||||||| || |     
T  18245475 attccactctctatatatagtagaaccaaattgaccacaaaaacacacaaaacctaacactatcaacaaaa------------tgaagatgattgtagct 18245562  T
Q  151 atcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatttctgcgtagcagattacaatgcgccaaatggcccggctggatattctt 250  Q
    |||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||   ||||||||||| || ||||||||||    
T  18245563 atctccttcattttttctcttctttccctttctcatgcatcagtagtagatttctgcgtagcagattacaatttaccaaatggccccgccggatattctt 18245662  T
Q  251 gcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagccgcagctggaaacacc 318  Q
    ||||| ||||||||||||||||||  |||||||||| ||||||||||||||| ||||| |||||||||    
T  18245663 gcaaaacaccatcaaaagtaaccgaaaatgacttcgcctaccacggcctagctgcagccggaaacacc 18245730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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