View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_16 (Length: 327)
Name: NF18179_low_16
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_16 |
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| [»] scaffold0726 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 60 - 318
Target Start/End: Complemental strand, 24754118 - 24753863
Alignment:
| Q |
60 |
gaatgcagagtattttccccctgtaatcacacgagaaatgagggtgaggttaactcctccccttgtattctcaccagaattgagggagacgttttctcgt |
159 |
Q |
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| T |
24754118 |
gaatgcagagtattttccccctgtaatcacacgagaaatgagggtgatgttaactcctccccttgtattctcaccagaattgagggagacgttttctcgt |
24754019 |
T |
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| Q |
160 |
cattggttcgagaagggaatggaaggtggtagtccaccttcactggccgtttttgtacgaaatggacttggggcaattttcgacatagcacaagattgtt |
259 |
Q |
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| T |
24754018 |
cattggttcgagaagggaatggaaggtggtagtccaccttcactggccttttttatacgaaatggacttggtcaaattttcgacatagctcaagattgtt |
24753919 |
T |
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| Q |
260 |
ttaaccgaggttctactttccaagcctccaattctgcatccggtcatgttgcttcttct |
318 |
Q |
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| T |
24753918 |
ttaaccgaggtt---ctttccaagcctccaattctgcatccggtcatgttgctgcttct |
24753863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 23680330 - 23680424
Alignment:
| Q |
216 |
acgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttccaagcctccaattctgcatccggtcatgttg |
310 |
Q |
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| T |
23680330 |
acgacatggacttgagtcaattttcagtatagctctagattgttttaaccgaggttctgctttccaagcctccaattcggcatccggtcatgttg |
23680424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 24052567 - 24052661
Alignment:
| Q |
216 |
acgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttctactttccaagcctccaattctgcatccggtcatgttg |
310 |
Q |
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| T |
24052567 |
acgacatggacttgagtcaattttcagtatagctctagattgttttaaccgaggttctgctttccaagcctccaattcggcatccggtcatgttg |
24052661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 24754183 - 24754135
Alignment:
| Q |
16 |
gatatcaaggatggagttcgtgatctcgtgttagaggacgtcgagaatg |
64 |
Q |
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| T |
24754183 |
gatatcaaggatggagttcgtgatctcgtgttagaggacgtcgagaatg |
24754135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 75 - 310
Target Start/End: Complemental strand, 6160 - 5925
Alignment:
| Q |
75 |
tccccctgtaatcacacgagaaatgagggtgaggttaactcctccccttgtattctcaccagaattgagggagacgttttctcgtcattggttcgagaag |
174 |
Q |
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| T |
6160 |
tccccttgtaatcccacgagaattgagggtgaggttaactcctccccttgtattctcacctgaattgagggagactttttctcgttattggttcgagaag |
6061 |
T |
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| Q |
175 |
ggaatggaaggtggtagtccaccttcactggccgtttttgtacgaaatggacttggggcaattttcgacatagcacaagattgttttaaccgaggttcta |
274 |
Q |
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| T |
6060 |
ggaatggtaggtggtagtccaccttcaaaggtcgtctttatagattatggacttggtcatattttcagcatagctcaagattgttttaaccgaggttatg |
5961 |
T |
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| Q |
275 |
ctttccaagcctccaattctgcatccggtcatgttg |
310 |
Q |
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| T |
5960 |
ctttccaagcctccaattctgcatccggtcatgttg |
5925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 6270 - 6222
Alignment:
| Q |
16 |
gatatcaaggatggagttcgtgatctcgtgttagaggacgtcgagaatg |
64 |
Q |
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| T |
6270 |
gatatcaaggatggagttcgtgatctcttgttagatgacgtcgagaatg |
6222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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