View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18179_low_2 (Length: 608)
Name: NF18179_low_2
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8368412 - 8368196
Alignment:
| Q |
1 |
acagagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8368412 |
acagagttattatcctatgcttctaggtacatgttagtaggcatgaggttataacaacctataaataacggttgtacaagctaattcaatcaatgagaat |
8368313 |
T |
|
| Q |
101 |
cataatttctattccatttcacttttcataatatggtatcag-agcctttttctctctctt--agagagagagttagttacgattcagttacacattttc |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8368312 |
cataatttctattccatttcacttctcataatatggtatcagtttcctttttctctctcttagagagagagagttagttacggttcagttacacattttc |
8368213 |
T |
|
| Q |
198 |
cgccattgatgcttgag |
214 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8368212 |
cgccattgatgcttgag |
8368196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 338 - 418
Target Start/End: Complemental strand, 8368061 - 8367981
Alignment:
| Q |
338 |
ctcctcgtgttgctccggttgttcagattcaacaagctaatcaagattcagtgtactttgttcatccaagtgaaggtccaa |
418 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8368061 |
ctcctcgtgctgctccggttgttcagattcaacaagctaataaaaattcagtatactttgttcatccaagtgaaggtccaa |
8367981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 9849387 - 9849173
Alignment:
| Q |
1 |
acagagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | | ||||||||| |
|
|
| T |
9849387 |
acagagttattatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataactgttgtacaagcaaataccagtaatgagaat |
9849288 |
T |
|
| Q |
101 |
cataatttctattccatttcacttttcataatatggtatcag-agcctttttctctctcttagagagagagttagttacgattcagttacacattttccg |
199 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9849287 |
catatcttctattccatttcacttttcataatatggtatcagttttatttttctctctcttagagagagaatcagttacgattcagttacacattttccg |
9849188 |
T |
|
| Q |
200 |
ccattgatgcttgag |
214 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9849187 |
ccattgatgcttgag |
9849173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9843261 - 9843129
Alignment:
| Q |
1 |
acagagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | | ||||||||| |
|
|
| T |
9843261 |
acagagttattatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataactgttgtacaagcaaataccagtaatgagaat |
9843162 |
T |
|
| Q |
101 |
cataatttctattccatttcacttttcataata |
133 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
9843161 |
catatcttctattccatttcacttttcataata |
9843129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 416
Target Start/End: Complemental strand, 9849049 - 9848959
Alignment:
| Q |
326 |
acatcacaatacctcctcgtgttgctccggttgttcagattcaacaagctaatcaagattcagtgtactttgttcatccaagtgaaggtcc |
416 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||| |
|
|
| T |
9849049 |
acatcacaatgcctcctcgtgttgctcctattgttcagattcaacaagctaatcaggattcagtctattttgttcatgcaagtgaaggtcc |
9848959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 40280469 - 40280576
Alignment:
| Q |
13 |
tcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatcataatttctat |
112 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| || ||||||||| |||||||| ||| |||||||| ||||||||||||||||||||| |||| || |
|
|
| T |
40280469 |
tcctatgcttctaggttcatgttagttagcatgtggatataacaacttataaatacttgttatacaagcttattcaatcaatgagaatcatattttccat |
40280568 |
T |
|
| Q |
113 |
tccatttc |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
40280569 |
tccatttc |
40280576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 18314441 - 18314330
Alignment:
| Q |
1 |
acagagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18314441 |
acagagttattatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaat |
18314342 |
T |
|
| Q |
101 |
cataatttctat |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18314341 |
cataatttctat |
18314330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 326 - 418
Target Start/End: Complemental strand, 18314200 - 18314108
Alignment:
| Q |
326 |
acatcacaatacctcctcgtgttgctccggttgttcagattcaacaagctaatcaagattcagtgtactttgttcatccaagtgaaggtccaa |
418 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18314200 |
acatcacaatgcctcctcatgttgctccggttgtccagattcaacaagctaatcaggattcagggtactttgttcatccaagtgaaggtccaa |
18314108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 420 - 502
Target Start/End: Complemental strand, 18312900 - 18312814
Alignment:
| Q |
420 |
ttttaatatacatgataaatcatataaaac----tcttttaagtaacagaaaaccacagtgtgttttatgccattttagactttcat |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
18312900 |
ttttaatatacatgataaatcatataaaacaaactcttgtaagtaacagaaaaccatagtgtgtcttatgccattttagactttcat |
18312814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 25189673 - 25189541
Alignment:
| Q |
1 |
acagagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | | ||||||||| |
|
|
| T |
25189673 |
acagagttattatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataactgttgtacaagcaaataccagtaatgagaat |
25189574 |
T |
|
| Q |
101 |
cataatttctattccatttcacttttcataata |
133 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
25189573 |
catatcttctattccatttcacttttcataata |
25189541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 27480702 - 27480586
Alignment:
| Q |
3 |
agagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatca |
102 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||| ||||||| ||| | || | | |||||||| ||||||||||||| ||||||||||||| |||| |
|
|
| T |
27480702 |
agagttattattctatgctt-taggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatcaatgaaaatct |
27480604 |
T |
|
| Q |
103 |
taatttctattccatttc |
120 |
Q |
| |
|
|| |||| ||| |||||| |
|
|
| T |
27480603 |
tattttccatttcatttc |
27480586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 27488054 - 27487938
Alignment:
| Q |
3 |
agagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatca |
102 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||| ||||||| ||| | || | | |||||||| ||||||||||||| ||||||||||||| |||| |
|
|
| T |
27488054 |
agagttattattctatgctt-taggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatcaatgaaaatct |
27487956 |
T |
|
| Q |
103 |
taatttctattccatttc |
120 |
Q |
| |
|
|| |||| ||| |||||| |
|
|
| T |
27487955 |
tattttccatttcatttc |
27487938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 420 - 578
Target Start/End: Complemental strand, 2798475 - 2798306
Alignment:
| Q |
420 |
ttttaatatacatgataaatcatataaaactcttttaagtaacagaaaaccacagtgtg-ttttatgccattttagactttcattggccagaaagaaagc |
518 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798475 |
ttttaacatacaagataaatcatataaaacccttgtaagtaacagcaaaccacagtgtgtttttatgccattttagactttcattggccagaaagaaagg |
2798376 |
T |
|
| Q |
519 |
ttatgtc----------atgattaagaaatacgttaaactgaataagcttcatcattcaaaaccatacca |
578 |
Q |
| |
|
| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2798375 |
tcattgcaatcacgtgtatgattaagaaatacgttaaactgaataagcttcatcattcaaaaccatacca |
2798306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 4318375 - 4318421
Alignment:
| Q |
167 |
agagttagttacgattcagttacacattttccgccattgatgcttgag |
214 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4318375 |
agagtttgttacgattcagttacac-ctttccgccattgatgcttgag |
4318421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 23871629 - 23871580
Alignment:
| Q |
71 |
gttgtacaagctaattcaatcaatgagaatcataatttctattccatttc |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
23871629 |
gttgtacaagcttattcaatcaatgagaatcatattttccattctatttc |
23871580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University