View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_24 (Length: 261)
Name: NF18179_low_24
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 44943831 - 44944077
Alignment:
| Q |
1 |
tcatcactctcctttctaaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaag |
100 |
Q |
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| T |
44943831 |
tcatcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaag |
44943930 |
T |
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| Q |
101 |
taaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44943931 |
caaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaagagtgactagcacgattcaatgt |
44944030 |
T |
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| Q |
201 |
cttagcaatatattccatatatgcctttttatctctgagtgttggtg |
247 |
Q |
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| T |
44944031 |
cttagcaatatattccatatatgcctttttatctcggagtgtaggtg |
44944077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 44945485 - 44945729
Alignment:
| Q |
1 |
tcatcactctcctttctaaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaag |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44945485 |
tcatcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaag |
44945584 |
T |
|
| Q |
101 |
taaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagccaagggaccaagagtgactagcacgattcaatgt |
200 |
Q |
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| T |
44945585 |
caaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaggagtaactagcgcgattcaatgt |
44945684 |
T |
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| Q |
201 |
cttagcaatatattccatatatgcctttttatctctgagtgttgg |
245 |
Q |
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| T |
44945685 |
cttagcaatatattccatatatgcctttttatctctgagtgttgg |
44945729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 44940692 - 44940794
Alignment:
| Q |
31 |
tgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagtaaacattggtataggcccataaatccata |
130 |
Q |
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|||||||||||||||||| ||| ||||||||||| ||||||||| | || ||||| || || ||||| ||||||| ||||| |||||||||||||||| |
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| T |
44940692 |
tgaagatcccttgtgatttgagtggttgtatccaagaagtacaaaataaatgatgtgaagcaagaacaaataaacatgggtatgggcccataaatccata |
44940791 |
T |
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| Q |
131 |
gga |
133 |
Q |
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||| |
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| T |
44940792 |
gga |
44940794 |
T |
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