View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_27 (Length: 241)
Name: NF18179_low_27
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 14337744 - 14337815
Alignment:
| Q |
154 |
atgctattgctacataatctttattttattttggtcctatggttttgtgtttgaagatttggacgatcttgt |
225 |
Q |
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| T |
14337744 |
atgctattgctacataatctttattttattttggtcctatggttttgtgtttgaagatttggacgatcttgt |
14337815 |
T |
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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 14337635 - 14337680
Alignment:
| Q |
46 |
aaaccatatatttaagttctcattatgttttaaagaaagcatattg |
91 |
Q |
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| T |
14337635 |
aaaccatatatttaagttctcattattttttaaagaaagcatattg |
14337680 |
T |
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