View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_3 (Length: 587)
Name: NF18179_low_3
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 41 - 492
Target Start/End: Complemental strand, 1575383 - 1574946
Alignment:
| Q |
41 |
tttggaaaggatggtagtttgtttggaaatggtatcaaaataccccgattcaagagaacc--gagcaagaaaatcaagatcagaaccaagatgaagaaaa |
138 |
Q |
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| T |
1575383 |
tttggaaaggatgattgtttgtttggaaatggtatcaaaatacgctagttcaagacaaccaagaggaagaaaatcaagatcaaaaccaagatgaagaaaa |
1575284 |
T |
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| Q |
139 |
agatctcaacaaacgtataatgacaatgttttatactgggagaaactaaaggaacttaggaatatcacgctccgtataataggtgatatgttggttacac |
238 |
Q |
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| T |
1575283 |
aaatc--atcaa-----taatgacaatgttttctactgggagaaactaaaggaacttaggaatatcacgctccgtatgcc-gttgatatgttggttacac |
1575192 |
T |
|
| Q |
239 |
cagagtatgccgttcatcttaaacaaacaaaacttaattctaataacaaaccttcactcactcgttgaaacctttctaaaatgatttttctcttgaccaa |
338 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1575191 |
cagagtatgccgttgatcttaaacaaacaaaacttaattctaataacaaaccttcactcactcgttgaaacctttctaaaatgatttttctcttgaccaa |
1575092 |
T |
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| Q |
339 |
ttgattatnnnnnnnnnnnnnnnnnnnnntagaaccatcaagctatacaacttatgtcctaaaataatgtgatgagagaaacgatggatgttccattctc |
438 |
Q |
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| T |
1575091 |
ttgattataaaaataaaaaaa--------tagaaccatcaagctatacaacttatgtcctaaaataatgtgatgagagaaacgatggatgttccattctc |
1575000 |
T |
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| Q |
439 |
ccacttttttccctacacactcatatacttcttcataatctaactctcaaataa |
492 |
Q |
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| T |
1574999 |
ccacttttttccctacacactcatatacttcttcataatctaactctcaaataa |
1574946 |
T |
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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 27981377 - 27981483
Alignment:
| Q |
38 |
agatttggaaaggatggtagtttgtttggaaatggtatcaaaataccccgattcaagagaacc--gagcaagaaaatcaagatcagaaccaagatgaaga |
135 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||| || |||||||||| | ||| |||||||||||||||||||||||||| |||| |
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| T |
27981377 |
agatttggaaaggatgcttgtttgtttggaaatggtatcaaaatatgtcggttcaagagaatcaagaggaagaaaatcaagatcagaaccaagataaaga |
27981476 |
T |
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| Q |
136 |
aaaagat |
142 |
Q |
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| T |
27981477 |
aaaagat |
27981483 |
T |
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