View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18179_low_4 (Length: 532)

Name: NF18179_low_4
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18179_low_4
NF18179_low_4
[»] chr3 (3 HSPs)
chr3 (486-529)||(46864881-46864924)
chr3 (472-509)||(20286988-20287025)
chr3 (472-509)||(31342091-31342128)
[»] chr7 (3 HSPs)
chr7 (467-525)||(17623244-17623302)
chr7 (467-525)||(16648883-16648941)
chr7 (472-509)||(17272783-17272820)
[»] chr5 (5 HSPs)
chr5 (465-529)||(3137745-3137810)
chr5 (467-529)||(42474384-42474446)
chr5 (459-508)||(9904193-9904242)
chr5 (472-509)||(29385322-29385359)
chr5 (467-519)||(5396344-5396396)
[»] chr4 (3 HSPs)
chr4 (473-526)||(43404570-43404623)
chr4 (472-509)||(6607432-6607469)
chr4 (472-509)||(31012211-31012248)
[»] chr2 (1 HSPs)
chr2 (472-509)||(39819147-39819184)
[»] chr1 (5 HSPs)
chr1 (472-509)||(28739350-28739387)
chr1 (472-509)||(6539596-6539633)
chr1 (472-509)||(9379902-9379939)
chr1 (473-509)||(9884925-9884961)
chr1 (473-509)||(50754808-50754844)
[»] chr8 (3 HSPs)
chr8 (469-510)||(7251522-7251563)
chr8 (455-524)||(7251579-7251648)
chr8 (467-524)||(18183117-18183174)
[»] scaffold0020 (1 HSPs)
scaffold0020 (467-527)||(1670-1730)


Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 529
Target Start/End: Original strand, 46864881 - 46864924
Alignment:
Q  486 acaagtgtgcaaaataacaaaaaatcatgactttcttctctctc 529  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  46864881 acaagtgtgaaaaatgacaaaaaatcatgactttcttctctctc 46864924  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 20287025 - 20286988
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  20287025 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 20286988  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 31342128 - 31342091
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  31342128 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 31342091  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 17623302 - 17623244
Alignment:
Q  467 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctc 525  Q
    |||||| ||||||||||| |||||||| |||||| |||||||||||||  |||||||||    
T  17623302 attggcaaaccacaatatcacaagtgtacaaaatgacaaaaaatcatggttttcttctc 17623244  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 16648941 - 16648883
Alignment:
Q  467 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctc 525  Q
    |||||| ||||||||| | |||||||| |||||| |||||||||||||  |||||||||    
T  16648941 attggcaaaccacaatttcacaagtgtacaaaatgacaaaaaatcatggttttcttctc 16648883  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 17272820 - 17272783
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  17272820 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 17272783  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 529
Target Start/End: Original strand, 3137745 - 3137810
Alignment:
Q  465 atattggccaaccacaatattacaagtgtgcaaaataacaaaa-aatcatgactttcttctctctc 529  Q
    ||||||||||| || |  || ||||||||||||||| |||||| ||||||||||||||||||||||    
T  3137745 atattggccaatcatagcatcacaagtgtgcaaaatgacaaaaaaatcatgactttcttctctctc 3137810  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 529
Target Start/End: Original strand, 42474384 - 42474446
Alignment:
Q  467 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctctctc 529  Q
    ||||| |||| | ||| |||||| |||||||||  ||||||| ||||||||||||||||||||    
T  42474384 attggtcaacaataatcttacaattgtgcaaaaggacaaaaactcatgactttcttctctctc 42474446  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 9904193 - 9904242
Alignment:
Q  459 ttggtaatattggccaaccacaatattacaagtgtgcaaaataacaaaaa 508  Q
    ||||||||||||  |||||||||| |||||||||| ||||| ||||||||    
T  9904193 ttggtaatattgatcaaccacaatgttacaagtgtacaaaaaaacaaaaa 9904242  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Original strand, 29385322 - 29385359
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  29385322 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 29385359  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 5396396 - 5396344
Alignment:
Q  467 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgacttt 519  Q
    ||||| |||||||||||| ||||||||||||||  | |||||||||| |||||    
T  5396396 attggtcaaccacaatatcacaagtgtgcaaaaggataaaaaatcataacttt 5396344  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 43404623 - 43404570
Alignment:
Q  473 caaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctct 526  Q
    |||||||||| | ||||||||| ||||| | |||||||||||||||||||||||    
T  43404623 caaccacaatgtcacaagtgtgaaaaatgataaaaaatcatgactttcttctct 43404570  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Original strand, 6607432 - 6607469
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  6607432 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 6607469  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 31012248 - 31012211
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  31012248 ccaaccacaatattacaagtatgcaaaacaacaaaaaa 31012211  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 39819184 - 39819147
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    |||||||||||||||||||||||||||| |||||||||    
T  39819184 ccaaccacaatattacaagtgtgcaaaacaacaaaaaa 39819147  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 509
Target Start/End: Original strand, 28739350 - 28739387
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  28739350 ccaaccacaatgttacaagtgtgcaaaataacaaaaaa 28739387  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Original strand, 6539596 - 6539633
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  6539596 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 6539633  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 509
Target Start/End: Complemental strand, 9379939 - 9379902
Alignment:
Q  472 ccaaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  9379939 ccaaccacaatgttacaagtgtgcaaaacaacaaaaaa 9379902  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 9884961 - 9884925
Alignment:
Q  473 caaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    |||||||||| |||||||||||||||| |||||||||    
T  9884961 caaccacaatgttacaagtgtgcaaaacaacaaaaaa 9884925  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 50754844 - 50754808
Alignment:
Q  473 caaccacaatattacaagtgtgcaaaataacaaaaaa 509  Q
    |||||||||| |||||||||||||||| |||||||||    
T  50754844 caaccacaatgttacaagtgtgcaaaacaacaaaaaa 50754808  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 7251522 - 7251563
Alignment:
Q  469 tggccaaccacaatattacaagtgtgcaaaataacaaaaaat 510  Q
    |||||||||||||| | ||||||||||||||| |||||||||    
T  7251522 tggccaaccacaatgtcacaagtgtgcaaaatgacaaaaaat 7251563  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 524
Target Start/End: Complemental strand, 7251648 - 7251579
Alignment:
Q  455 cactttggtaatattggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttct 524  Q
    ||||||||| ||||||  ||| |||||||| | |||||| |||||| | ||||||| |||||||||||||    
T  7251648 cactttggtgatattgatcaatcacaatatcataagtgtacaaaatgataaaaaattatgactttcttct 7251579  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 18183174 - 18183117
Alignment:
Q  467 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttct 524  Q
    ||||| |||||||||| | ||||| ||| ||||| | |||||||||||||||||||||    
T  18183174 attggtcaaccacaatgtcacaagcgtgtaaaatgataaaaaatcatgactttcttct 18183117  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 527
Target Start/End: Original strand, 1670 - 1730
Alignment:
Q  467 attggccaaccacaatattacaagtgtgcaaaataacaaaaaatcatgactttcttctctc 527  Q
    |||||||| ||||||  |||||| | || ||||  ||||||||||||||||||||||||||    
T  1670 attggccatccacaaagttacaaatatgtaaaaagacaaaaaatcatgactttcttctctc 1730  T

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