View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_6 (Length: 430)
Name: NF18179_low_6
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_6 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 29265538 - 29265430
Alignment:
| Q |
44 |
gaggttctaagtttattactcaatatgtgtgtttaaggttgttgagatatgcactgatttggtcttcactattaggatagtcttataaattaacggcata |
143 |
Q |
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| T |
29265538 |
gaggttctaagtttattactcatc--gtgtgtttaaggttgttgagacatgcactgatttggtctttaatattaggatagttttaaaaattaatggcata |
29265441 |
T |
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| Q |
144 |
tatgatatatc |
154 |
Q |
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||||||||||| |
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| T |
29265440 |
tatgatatatc |
29265430 |
T |
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Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 443514 - 443618
Alignment:
| Q |
44 |
gaggttctaagtttattactcaatatgtgtgtttaaggttgttgagatatgcactgatttggtcttcactattaggatagtcttataaattaacggcata |
143 |
Q |
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||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||| ||||| |||| ||||||||||| |||||||||||||| |
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| T |
443514 |
gaggttctaagtttattgctcaatatgcgt--ttaaggttgttgagatatgtactgatttgatcttcgctatccggatagtcttaaaaattaacggcata |
443611 |
T |
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| Q |
144 |
tatgata |
150 |
Q |
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||||||| |
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| T |
443612 |
tatgata |
443618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 442650 - 442734
Alignment:
| Q |
287 |
aacgagccatttgtctcacttagtactcattgctctcataatgctattttcctttcaaaagctctttagatcagtagtcataaat |
371 |
Q |
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| T |
442650 |
aacgtgccatttgtcgcatttagtactcatggctctcataatgctattctcctttcaaaagctctttagatcagtagtcctaaat |
442734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 50828661 - 50828551
Alignment:
| Q |
225 |
aatgatgttttctaaaccttttatagtgaaaaatgatcatgtttgagctgaggatagcaactaacgagccatttgtctcacttagtactcattgctctca |
324 |
Q |
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||||||||||||| ||| ||||||||||||||| |||||||||||| |||||| |||| ||| | ||||||||||||| ||||||||||| ||||||| |
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| T |
50828661 |
aatgatgttttcttaactttttatagtgaaaaaatatcatgtttgagatgaggagagcagttaatgtgccatttgtctcatttagtactcatggctctca |
50828562 |
T |
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| Q |
325 |
taatgctattt |
335 |
Q |
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|||| ||||| |
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| T |
50828561 |
aaatgttattt |
50828551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 50847192 - 50847302
Alignment:
| Q |
225 |
aatgatgttttctaaaccttttatagtgaaaaatgatcatgtttgagctgaggatagcaactaacgagccatttgtctcacttagtactcattgctctca |
324 |
Q |
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||||||||||||| ||| ||||||||||||||| |||||||||||| |||||| |||| ||| | ||||||||||||| ||||||||||| ||||||| |
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| T |
50847192 |
aatgatgttttcttaactttttatagtgaaaaaatatcatgtttgagatgaggagagcagttaatgtgccatttgtctcatttagtactcatggctctca |
50847291 |
T |
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| Q |
325 |
taatgctattt |
335 |
Q |
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|||| ||||| |
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| T |
50847292 |
aaatgttattt |
50847302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 25435036 - 25435146
Alignment:
| Q |
225 |
aatgatgttttctaaaccttttatagtgaaaaatgatcatgtttgagctgaggatagcaactaacgagccatttgtctcacttagtactcattgctctca |
324 |
Q |
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||||||||||||| ||| |||||||| |||||| |||||||||||| |||||| |||| ||| | ||||||||||||| ||||||||||| ||||||| |
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| T |
25435036 |
aatgatgttttcttaactttttatagcgaaaaaatatcatgtttgagatgaggagagcagttaatgtgccatttgtctcatttagtactcatggctctca |
25435135 |
T |
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| Q |
325 |
taatgctattt |
335 |
Q |
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|||| ||||| |
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| T |
25435136 |
aaatgttattt |
25435146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 80552 - 80488
Alignment:
| Q |
306 |
ttagtactcattgctctcataatgctattttcctttcaaaagctctttagatcagtagtcataaat |
371 |
Q |
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||||||||||| |||||||||||||||||||| |||||||| || ||||||| ||||||| ||||| |
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| T |
80552 |
ttagtactcatggctctcataatgctattttcttttcaaaatct-tttagatgagtagtcctaaat |
80488 |
T |
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