View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_8 (Length: 415)
Name: NF18179_low_8
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 116 - 409
Target Start/End: Complemental strand, 18252159 - 18251866
Alignment:
| Q |
116 |
aatggaggcttagatggttacattgtctttttcacaacaaatactaaattaagacatgttattggaaaagtatctaaataaagattctactttgtatact |
215 |
Q |
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| T |
18252159 |
aatgaaggcttagatggttacattgtctttttcacaacaaatactaaattgagacatgttattggaaaagtatctaaataaagattctactttgtatgct |
18252060 |
T |
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| Q |
216 |
atatagtttgtagctagtgtttaccctccccttctcactaggaaatgacaccggtgatttggagtttggtcggaaagcaaattcagtttctcttgaacaa |
315 |
Q |
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| T |
18252059 |
atatagtttgtagctagtgtttaccctctccttctcactagaaaatgacaccggtgatttggagtttggtcagaaagcaaactcagtttctcttgaacaa |
18251960 |
T |
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| Q |
316 |
tttctcctcgatgctcattaaccatttgtatctaattgcttggttattttatatatccatgtcttttctctaccactcttgttatttcttctca |
409 |
Q |
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| T |
18251959 |
tttctcctcgatacttattaaccacttgtatctaattgtttggttattttatatatccacgtcttttctctaccactcttgttatttcttctca |
18251866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 18256999 - 18257105
Alignment:
| Q |
1 |
aatatatgtttttgatattccttttgaataatttgaattgatcattcaatagtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattctaa |
100 |
Q |
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| T |
18256999 |
aatatatatttttaatattctttctgaataatttgaattgatcattcaatagtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattctaa |
18257098 |
T |
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| Q |
101 |
caaatgc |
107 |
Q |
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| T |
18257099 |
caaatgc |
18257105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 18252569 - 18252468
Alignment:
| Q |
1 |
aatatatgtttttgatattccttttgaataatttgaattgatcattcaatagtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattctaa |
100 |
Q |
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| T |
18252569 |
aatatatgttttttatattccttttgaataatttgaattgatcatt-----gtcattgacaaatgcatgtaatgagtaatgatgattgtggtcattctaa |
18252475 |
T |
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| Q |
101 |
caaatgc |
107 |
Q |
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| T |
18252474 |
caaatgc |
18252468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 31221611 - 31221543
Alignment:
| Q |
125 |
ttagatggttacattgtctttttcacaac-aaatactaaattaagacatgttattggaaaagtatctaa |
192 |
Q |
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||||||||||| ||||||||||||| ||| |||||||| | | ||||||| |||||||||||||||||| |
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| T |
31221611 |
ttagatggttagattgtctttttcagaacaaaatactagaatgagacatgctattggaaaagtatctaa |
31221543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 31246188 - 31246112
Alignment:
| Q |
125 |
ttagatggttacattgtctttttcacaacaaa-tactaaattaagacatgttattggaaaagtatctaaataaagat |
200 |
Q |
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|||| ||| ||||||||||||| | |||||| ||||||||| ||| |||||| || ||||| |||||||||||||| |
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| T |
31246188 |
ttaggtggctacattgtcttttacgtaacaaaatactaaattgagatatgttactgcaaaagcatctaaataaagat |
31246112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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