View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18179_low_9 (Length: 388)
Name: NF18179_low_9
Description: NF18179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18179_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 370
Target Start/End: Complemental strand, 1362491 - 1362136
Alignment:
| Q |
15 |
caaagggaaacacatgatatgaactctgtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattga |
114 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1362491 |
caaagggaaacacatgatatgaactcagtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattga |
1362392 |
T |
|
| Q |
115 |
ttatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgag |
214 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1362391 |
ttatgaatatcttttgaactgaaaactttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgag |
1362292 |
T |
|
| Q |
215 |
ccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1362291 |
ccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaag |
1362192 |
T |
|
| Q |
315 |
caaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaac |
370 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1362191 |
caaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaac |
1362136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 42 - 370
Target Start/End: Complemental strand, 1355578 - 1355250
Alignment:
| Q |
42 |
gtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacg |
141 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1355578 |
gtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaacc |
1355479 |
T |
|
| Q |
142 |
ttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355478 |
ttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccat |
1355379 |
T |
|
| Q |
242 |
cttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatg |
341 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1355378 |
cttcctcactccttggtacttcaacagccacttccttttccaccaatgcccttgaaaacaaacactggtcaagcaaataaggcagtgtcacaagaacatg |
1355279 |
T |
|
| Q |
342 |
gccgaaatgaaccttctcaataacagaac |
370 |
Q |
| |
|
||| ||||||||||| ||||||||||||| |
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|
| T |
1355278 |
gccaaaatgaaccttttcaataacagaac |
1355250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 173 - 362
Target Start/End: Complemental strand, 20493118 - 20492929
Alignment:
| Q |
173 |
tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccac |
272 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| | || | ||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| |
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| T |
20493118 |
tacttccttcctcatccactattgccaacctcaatgttttggctatagagtccctagtaaaggacccatcttgctcattccttggtacctcaatagccaa |
20493019 |
T |
|
| Q |
273 |
tcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaat |
362 |
Q |
| |
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| | |||| | | | | ||||||||||||||||| |||| |||||||||| ||||||||| ||||| || ||||||| ||||||||| |
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| T |
20493018 |
tttcctttcttctagttctcttgaaaacaaacattgatcaattaaataaggcaatgtcacaagtacatgcccaaaatgaagcttctcaat |
20492929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 73 - 362
Target Start/End: Complemental strand, 29955083 - 29954794
Alignment:
| Q |
73 |
ctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaac |
172 |
Q |
| |
|
|||||||| | |||||||||||||| ||| | ||| |||| ||| |||| |||||||||||||||||| || ||| ||||| ||||| |||| || || |
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| T |
29955083 |
ctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttttccatatctttggcattattcc-gatac |
29954985 |
T |
|
| Q |
173 |
-tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagcca |
271 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||| |||||||||||||||||||| |||| |
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| T |
29954984 |
atacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatcttgctcactccttggtacctcaattgcca |
29954885 |
T |
|
| Q |
272 |
ctcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaat |
362 |
Q |
| |
|
| |||||| | | ||| ||||||||||||||||||||| | |||||||||| ||||||||| ||||| || ||||||| ||||||||| |
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| T |
29954884 |
ccttcttttcttctagtgctcttgaaaacaaacattggtcaggtaaataaggcaatgtcacaaggacatgcccaaaatgaagcttctcaat |
29954794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 84 - 341
Target Start/End: Original strand, 51369381 - 51369638
Alignment:
| Q |
84 |
aagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaactacttccttcc |
183 |
Q |
| |
|
||||||||| || | ||| | ||| |||||||| |||| ||||||||||||||||| || |||| ||||||||||| |||||| | | || |||||| |
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| T |
51369381 |
aagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccatatctttagcatttttcctgcacgtgctaccttcc |
51369480 |
T |
|
| Q |
184 |
tcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttcca |
283 |
Q |
| |
|
|||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||| |
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|
| T |
51369481 |
tcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggtacttcaacagccactttcttttctt |
51369580 |
T |
|
| Q |
284 |
ccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatg |
341 |
Q |
| |
|
| | | |||| | ||||||| |||||||| | |||||||| ||| ||||||||||| |
|
|
| T |
51369581 |
ctagtaatcttgcatacaaacactggtcaagtatataaggcaatgtgacaagaacatg |
51369638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 73 - 362
Target Start/End: Complemental strand, 11532396 - 11532107
Alignment:
| Q |
73 |
ctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaac |
172 |
Q |
| |
|
|||||||| | ||||||| |||| | ||| ||||| |||||||| |||| |||||||||||||||||| || |||| ||||| |||||||| ||| | |
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| T |
11532396 |
ctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggcattgtttctgtacg |
11532297 |
T |
|
| Q |
173 |
tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccac |
272 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| | || || |||||||||||||| ||||| |||| |||||||||||||||||||| |||||| |
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|
| T |
11532296 |
tacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggtacctcaatagccac |
11532197 |
T |
|
| Q |
273 |
tcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaat |
362 |
Q |
| |
|
| |||||| | | | | ||||| |||||||||||||||| |||||||||| |||||||||| |||| || ||||||| ||||||||| |
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|
| T |
11532196 |
tttcttttcttctagtactcttgagaacaaacattggtcaattaaataaggcaatgtcacaagagcatgcccaaaatgaagcttctcaat |
11532107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 109 - 341
Target Start/End: Complemental strand, 14589470 - 14589238
Alignment:
| Q |
109 |
tattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
208 |
Q |
| |
|
|||| ||| |||| |||||||||||| | ||| || |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
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|
| T |
14589470 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14589371 |
T |
|
| Q |
209 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
308 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |||||| | | | | |||| |||||||||||| |
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|
| T |
14589370 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattg |
14589271 |
T |
|
| Q |
309 |
gtcaagcaaataaggcagtgtcacaagaacatg |
341 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |
|
|
| T |
14589270 |
gtcaagtaaataaggcaatgtcacaagaacatg |
14589238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 109 - 341
Target Start/End: Complemental strand, 14623128 - 14622896
Alignment:
| Q |
109 |
tattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
208 |
Q |
| |
|
|||| ||| |||| |||||||||||| | ||| || |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14623128 |
tattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14623029 |
T |
|
| Q |
209 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
308 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |||||| | | | | |||| |||||||||||| |
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|
| T |
14623028 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattg |
14622929 |
T |
|
| Q |
309 |
gtcaagcaaataaggcagtgtcacaagaacatg |
341 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |
|
|
| T |
14622928 |
gtcaagtaaataaggcaatgtcacaagaacatg |
14622896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 362
Target Start/End: Complemental strand, 12847062 - 12846772
Alignment:
| Q |
72 |
cctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaa |
171 |
Q |
| |
|
||||||||| | |||||||||||||| ||| ||||| |||| || |||| |||||||||||||||| || |||| |||||| |||||||||||| || |
|
|
| T |
12847062 |
cctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgttcctgtaa |
12846963 |
T |
|
| Q |
172 |
ctacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagcca |
271 |
Q |
| |
|
|| ||||||| |||||| ||||| |||||||||| | || ||| ||||||||||||| |||||||| |||||||| ||||| ||||||| |||| |
|
|
| T |
12846962 |
ataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcacttcttggaacctcaatggcca |
12846863 |
T |
|
| Q |
272 |
ctcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaat |
362 |
Q |
| |
|
|| |||||| | | | | ||||||||||||||||| || ||||||||||||| ||| ||||||||||| || ||||| | ||||||||| |
|
|
| T |
12846862 |
ctttcttttcagctagttctcttgaaaacaaacattgatctagcaaataaggcaatgtaacaagaacatgtccaaaatggagcttctcaat |
12846772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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