View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18180_low_1 (Length: 610)

Name: NF18180_low_1
Description: NF18180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18180_low_1
NF18180_low_1
[»] chr2 (7 HSPs)
chr2 (135-546)||(5111207-5111623)
chr2 (135-482)||(5083517-5083864)
chr2 (145-482)||(5094214-5094544)
chr2 (1-147)||(5083909-5084055)
chr2 (1-147)||(5094013-5094159)
chr2 (1-147)||(5111016-5111162)
chr2 (481-594)||(5094582-5094698)
[»] chr6 (2 HSPs)
chr6 (1-147)||(14427691-14427837)
chr6 (151-189)||(14427589-14427627)
[»] chr3 (3 HSPs)
chr3 (53-147)||(16872459-16872553)
chr3 (401-470)||(16873582-16873651)
chr3 (7-61)||(16873359-16873413)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 135 - 546
Target Start/End: Original strand, 5111207 - 5111623
Alignment:
Q  135 tgaagagaaagaaatggttggatttgagcgacaataattttgttggagaaattccttcaaggatagggggcttatctaaacttcaacagttggatattgg 234  Q
    ||||||||  |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| | |||||||| || |||||| ||      
T  5111207 tgaagagattgaaatggttggatttgagtgacaatgattttgttggagaaattccttcaaggataggggacttagcaaaacttcatcatttggatcttta 5111306  T
Q  235 ttataataatattgatggagatattcctcaatctatatccaatttgtcaatgttagaatatttaaatttgaaatcaaatcacatcaaaggaaccattcca 334  Q
     | ||||||| ||| ||||| ||||||||||||||||||| | ||||||||||||   ||  || ||||||   |||||  |||||||||||||||||||    
T  5111307 ctttaataattttgttggagctattcctcaatctatatccgacttgtcaatgttacggtacctagatttgagtacaaatttcatcaaaggaaccattcca 5111406  T
Q  335 catgctattggtcaacttcgtcagttgaagattttgaatcttagaaataacaagctctctggaatgataccaacaacaatttccaacatgtcttcacttg 434  Q
    ||||| |||||||||||| ||  ||||| ||||||| || |||||||||||||||||| ||||||  ||||||||||||| |||||||||||||||||||    
T  5111407 catgccattggtcaacttggtatgttgaggattttggatattagaaataacaagctctgtggaatcctaccaacaacaatatccaacatgtcttcacttg 5111506  T
Q  435 aagaaatttatttagcaaaaaactccttatcggg-----taagatatattcactttattttttacacgtgtgtggatactttgcactgtgcagcaaacca 529  Q
    |||||||| |||||||||| ||||||||||||||     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5111507 aagaaattcatttagcaaataactccttatcgggtaagataagatatattcactttatttattacacgtgtgtggatactttgcactgtgcagcaaacca 5111606  T
Q  530 caaagtcgttgatcaaa 546  Q
    |||||||||||||||||    
T  5111607 caaagtcgttgatcaaa 5111623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 135 - 482
Target Start/End: Complemental strand, 5083864 - 5083517
Alignment:
Q  135 tgaagagaaagaaatggttggatttgagcgacaataattttgttggagaaattccttcaaggatagggggcttatctaaacttcaacagttggatattgg 234  Q
    ||||||||  ||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  5083864 tgaagagattgaaattgttgaatttgagcaacaatgattttgttggagaaattccttcaaggataggggacttatcaaaacttcaacaattggatattcg 5083765  T
Q  235 ttataataatattgatggagatattcctcaatctatatccaatttgtcaatgttagaatatttaaatttgaaatcaaatcacatcaaaggaaccattcca 334  Q
      | || ||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5083764 gcaaaacaatattgttggagttattcctcaatctatatccaacttgtcaatgttagaatatctaaatttgaaatcaaatcacatcaaaggaaccattcca 5083665  T
Q  335 catgctattggtcaacttcgtcagttgaagattttgaatcttagaaataacaagctctctggaatgataccaacaacaatttccaacatgtcttcacttg 434  Q
    ||||| ||| |||||||| ||  ||||| ||||||| || |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  5083664 catgccattagtcaacttggtatgttgaggattttggatattagaaataacaagctctctggaatcctaccaacaacaatatccaacatgtcttcacttg 5083565  T
Q  435 aagaaatttatttagcaaaaaactccttatcgggtaagatatattcac 482  Q
    |||||||| |||||||||| ||||| ||||| |||| |||||||||||    
T  5083564 aagaaattcatttagcaaacaactctttatctggtatgatatattcac 5083517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 145 - 482
Target Start/End: Original strand, 5094214 - 5094544
Alignment:
Q  145 gaaatggttggatttgagcgacaataattttgttggagaaattccttcaaggatagggggcttatctaaacttcaacagttggatattggttataataat 244  Q
    ||||| |||| |||| ||| ||||| |||||||||||||||||||||||||||||||||  ||||| ||||||||||| ||||||||| | |||||||||    
T  5094214 gaaattgttgaatttaagcaacaatgattttgttggagaaattccttcaaggataggggagttatcaaaacttcaacaattggatattagctataataat 5094313  T
Q  245 attgatggagatattcctcaatctatatccaatttgtcaatgttagaatatttaaatttgaaatcaaatcacatcaaaggaaccattccacatgctattg 344  Q
    |||| ||||| ||||||||||||||||| ||| |||||||||||||||||| ||  ||||          ||||||||||||||||||||||||| ||||    
T  5094314 attgttggagttattcctcaatctatattcaacttgtcaatgttagaatatctacgtttg----------acatcaaaggaaccattccacatgcaattg 5094403  T
Q  345 gtcaacttcgtcagttgaagattttgaatcttagaaataaca---agctctctggaatgataccaacaacaatttccaacatgtcttcacttgaagaaat 441  Q
    |||||||||||||||||| |  ||||| | || | |||||||    ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  5094404 gtcaacttcgtcagttgaggtatttgagtattggtaataacaggttgctgtctggaatgataccaacaacaatttgcaacatgtcttcacttgaagtaat 5094503  T
Q  442 ttatttagcaaaaaactccttatcgggtaagatatattcac 482  Q
    |||||||||||| ||||||||||| |||| |||||| ||||    
T  5094504 ttatttagcaaataactccttatcaggtatgatatactcac 5094544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 5083909 - 5084055
Alignment:
Q  1 tgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattgtaccttcaaggcccatgttactaagattcaatgcatttactcttccat 100  Q
    |||| ||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5083909 tgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaaggtccatgttactaagattcaatgcatttactcttccat 5084008  T
Q  101 gatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5084009 gatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa 5084055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 5094159 - 5094013
Alignment:
Q  1 tgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattgtaccttcaaggcccatgttactaagattcaatgcatttactcttccat 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5094159 tgtaaatcaagaacaataaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggcccatgctactaagattcaatgcatttactcttccat 5094060  T
Q  101 gatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa 147  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||    
T  5094059 ggtgttcatcacaagtaacaccaacccaattgcatgaagacaaagaa 5094013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 5111162 - 5111016
Alignment:
Q  1 tgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattgtaccttcaaggcccatgttactaagattcaatgcatttactcttccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||    
T  5111162 tgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtccatgttattaagatccaatgcattcactcttccat 5111063  T
Q  101 gatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5111062 gatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa 5111016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 481 - 594
Target Start/End: Original strand, 5094582 - 5094698
Alignment:
Q  481 actttattttttacacgtgtgtggatactttgcactgtgcagcaaaccacaaagtcgttgatcaaagtgagacaaattccaatttg---ttccttatttc 577  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    || || |||||    
T  5094582 actttatttattacacgtgtgtggatactttgcattgtgcagcaaaccacaaagtcgttgatctaagtgagacaaattccaattttatttttctcatttc 5094681  T
Q  578 gatctaacggttgtgta 594  Q
    |||||||||| ||||||    
T  5094682 gatctaacggctgtgta 5094698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 7e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 14427691 - 14427837
Alignment:
Q  1 tgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattgtaccttcaaggcccatgttactaagattcaatgcatttactcttccat 100  Q
    |||| ||||||||||||||||||||| |||||||| |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14427691 tgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaagattcaatgcatttactcttccat 14427790  T
Q  101 gatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14427791 gatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa 14427837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 14427627 - 14427589
Alignment:
Q  151 gttggatttgagcgacaataattttgttggagaaattcc 189  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  14427627 gttggatttgagcaacaatgattttgttggagaaattcc 14427589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 16872553 - 16872459
Alignment:
Q  53 taccttcaaggcccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa 147  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||    
T  16872553 taccttcaagtcccatattactaagattcaatgcctttactcttccatgatgctcatcacaagtgacaccaacccaattacatgatgagaaagaa 16872459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 16873582 - 16873651
Alignment:
Q  401 ataccaacaacaatttccaacatgtcttcacttgaagaaatttatttagcaaaaaactccttatcgggta 470  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||||| | |||||||||||| ||||    
T  16873582 ataccaacaacaatttccaacatgtctacacttgaagaaatccatttagctagaaactccttatcaggta 16873651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 16873413 - 16873359
Alignment:
Q  7 tcaagaacaacaaggaaagaaagatttcccaattgaggggaaattgtaccttcaa 61  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||    
T  16873413 tcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa 16873359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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