View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18180_low_2 (Length: 392)
Name: NF18180_low_2
Description: NF18180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18180_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 30781511 - 30781864
Alignment:
| Q |
7 |
ctatctatagcaatgatgtaagaacaacttcagagtaatgaaatctttgcttcatttttgtcttccagttaccctcttcctctctacatctcatgcttca |
106 |
Q |
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| T |
30781511 |
ctatctacagcaatgatgtaagaac---ttcagagtaatgaaatctttgcttcatttttgtcttccagttaccctcttcctct--acatctcatgcttca |
30781605 |
T |
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| Q |
107 |
ctaccttcgatgagataggttttggtccaatttattcctagcagtaaacctgaagacctattattaaaatgcaaattttaacgatgcatagtttgtgaat |
206 |
Q |
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| T |
30781606 |
ctaccttcgatgagataggttttggtccaacttattcctagcagtaaacctgaagacctattattaaaatgcaaattttaacgatgcatagtttgtgaat |
30781705 |
T |
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| Q |
207 |
tggatttttcattatagtaagcatggaataatcataagcaataatcataaattaggcgattagtgactnnnnnnntaacaaatcaccagaagggatgaat |
306 |
Q |
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| T |
30781706 |
tggatttttcattatagt--------aataagcat--ggaataatcataaattaggcgattagtgactaaaaaaataacaaatcaccagaagggatgaat |
30781795 |
T |
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| Q |
307 |
atgttaagaatcaaagaataatttatgacacctaatatacaacaaaatatttgctttgagaatgtcagc |
375 |
Q |
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| T |
30781796 |
atgttaagaatcaaagaataatttatgacacctaatatacaacaaaatatttgctttgagaatgtcagc |
30781864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 178 - 375
Target Start/End: Original strand, 30781879 - 30782066
Alignment:
| Q |
178 |
caaattttaacgatgcatagtttgtgaattggatttttcattatagtaagcatggaataatcataagcaataatcataaattaggcgattagtgactnnn |
277 |
Q |
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| T |
30781879 |
caaattttaacgatgcatagtttgtgaattggatttttcattatagtaa--------taagcat--ggaataatcataaattaggcgattagtgactaaa |
30781968 |
T |
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| Q |
278 |
nnnntaacaaatcaccagaagggatgaatatgttaagaatcaaagaataatttatgacacctaatatacaacaaaatatttgctttgagaatgtcagc |
375 |
Q |
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| T |
30781969 |
aaaataacaaatcaccagaagggatgaatatgttaagaatcaaagaataatttatgacacctaatatacaacaaaatatttgctttgagaatgtcagc |
30782066 |
T |
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