View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18180_low_4 (Length: 317)
Name: NF18180_low_4
Description: NF18180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18180_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 56046111 - 56045827
Alignment:
| Q |
17 |
ataggtggcagaaatattgaatggagttagtacctggttggtagttgcttggatgacaccgattgggagagttacaacaaaagctaagccaaaagcaaag |
116 |
Q |
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| T |
56046111 |
ataggtggcagaaatattgaatggagttagtacctggttggtagttgcttggatgacaccgattgggagagttacaacaaaagctaagccaaaagcaaag |
56046012 |
T |
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| Q |
117 |
agcatgccccaccatggaagttgcacatccgttttccaaacaaaagccattactaaggatagcgccatgcttccaaataataaaatgaggaaccaccatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56046011 |
agcatgccccaccatggaagttgcacatccgttttccaaacaaaagccattactaaggatagcgccatgcttccaaataataaaatgaggaaccaccatt |
56045912 |
T |
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| Q |
217 |
ctggtacttgcttataagccttcatgagcctaccatgcacatccactttgacgttacccattgccgatttactctgtctcaatat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
56045911 |
ctggtacttgcttataagccttcatgagcctaccatgcacatcaacttttacgttacccattgccgatttactctgtctcaatat |
56045827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 55707400 - 55707250
Alignment:
| Q |
26 |
agaaatattgaatggagttagtacctggttggtagttgcttggatgacaccgattgggagagttacaacaaaagctaagccaaaagcaaagagcatgccc |
125 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| |
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| T |
55707400 |
agaaatattgattggagttagtgcctggttggtagttgcttggatgacaccgattgggagggttacaacaaaagcgaagccaaaagcaaagagcataccc |
55707301 |
T |
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| Q |
126 |
caccatggaagttgcacatccgttttccaaacaaaagccattactaaggata |
177 |
Q |
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||| || | |||||||||| |||||||| || ||||||||||||| ||||| |
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| T |
55707300 |
cacaatagcagttgcacatatgttttccacac-aaagccattactatggata |
55707250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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