View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18180_low_6 (Length: 250)
Name: NF18180_low_6
Description: NF18180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18180_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 36531123 - 36531301
Alignment:
| Q |
66 |
ggtaatattttgagaaatgttgtttagaagataaacacaatttaaaattgctatgcatgtttgaagtttaaatttatccaattaactcagcagaaaattt |
165 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36531123 |
ggtaataatttgagaaatgttgtttagaagataaacacaatttaaaattgctatgcatgtttgaagtttaaatttatccaattaactcagcagaaaattt |
36531222 |
T |
|
| Q |
166 |
gtaagctgactgaataatacttgtttcaaaccagccaaatcattcattcaatcagataacgagtggttcttcttctctc |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36531223 |
gtaagctgactaaataatacttgtttcaaaccagccaaatcattcattcaatcagataacgagtggttcttcttctctc |
36531301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36530947 - 36531013
Alignment:
| Q |
1 |
tactgcattgtatgaatttaatgtagggtccatttatgcctctcattattatgttgacccccgatgg |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36530947 |
tactgcattgtatgaatttaatgtagggtccatttatgcctctcattattatgttgaccccccatgg |
36531013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University