View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18181_high_2 (Length: 830)
Name: NF18181_high_2
Description: NF18181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18181_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 2 - 810
Target Start/End: Original strand, 35425994 - 35426783
Alignment:
| Q |
2 |
catcaagacaagattagaaatcaaattttaaattctnnnnnnnnnnn-tcagagaaactacaatattttcaatgtagaga-gatgtaaaacattagacag |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35425994 |
catcaagacaagattagaaatcaaattttaaattctaaaaaaaaaaaatcagagaaactacaatattttcaatgtagagaagatgtaaaacattagacaa |
35426093 |
T |
|
| Q |
100 |
ccaatccaaattaaaattagatcatgcatgcgacataacatgttaatcccacattagacgagtctagcatttttacatataaatccaaatccgaaagtga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426094 |
ccaatccaaattaaaattagatcatgcatgcgacataacatgttaatcccacattagacgagtctagcatttttacatataaatccaaatccgaaagtga |
35426193 |
T |
|
| Q |
200 |
gagttacaatacagcaaaaaataaagaagttaatcccacatttctaacaatatatcaaaagaattcaagtctttgtataacttgcgtcgatcgatgaaca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426194 |
gagttacaatacagcaaaaaataaagaagttaatcccacatttctaacaat----caaaagaattcaagtctttgtataacttgcgtcgatcgatgaaca |
35426289 |
T |
|
| Q |
300 |
caaccttacttgaacataatctgttttttaggatcataaaagtgtgtctttgatttccgtgtgatcagagtgtgattaacgctgagagcatctgtttgag |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
35426290 |
caaccttacttgaacataatctgttttttaggatcatacaagtgtatctttgatttccgtgt-----------gattaacgcggagagcatctgtttgag |
35426378 |
T |
|
| Q |
400 |
acatcatctgtgctgtagaggatcgatctcagcctcggccagggatgtctgacagagtcaactataatagacaccaaatttttacagaaaggaatggcat |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426379 |
acatcatctgtgctgtagaggatcgatctcagcctcggccagggatgtctgacagagtcaactataatagacaccaaatttttacagaaaggaatggcat |
35426478 |
T |
|
| Q |
500 |
tgattaacttgaatttccccttcttgttgattgtgatgtgtggtggtgaccatgtggtttgatttataaaacagtaaaagggggactaggtcccctttgt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426479 |
tgattaacttgaatttccccttcttgttgattgtgatgtgtggtcgtgaccatgtgttttgatttataaaacagtaaaagggggactaggtcccctttgt |
35426578 |
T |
|
| Q |
600 |
ttcctacttccttggagtttcctttttcaaagtttaaccaatagagaagatgcatactccatattgcagcggaaaaatcaaaagtttttatttcagttac |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
35426579 |
ttcctacttccttggagtttcctttttcaaagtttaaccaatagagaagatgcatactccatattgcagcggaaaaatctaaagtttttatttcagtttc |
35426678 |
T |
|
| Q |
700 |
tggcaaattggcctattgagacagttagaggagttaacacatagccagccacattcaagcccctcaagctcaactatcatgatttttacatacactactt |
799 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35426679 |
tggcaaattggcctattgagacagttagaggagttaacacatagccagccacattcaagccc------ctcaactatcatgatttttacatacactactt |
35426772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 700 - 812
Target Start/End: Complemental strand, 35375002 - 35374900
Alignment:
| Q |
700 |
tggcaaattggcctattgagacagttagaggagttaacacatagccagccacattcaagcccctcaagctcaactatcatgatttttacatacactactt |
799 |
Q |
| |
|
||||||||||||||| ||| |||| ||||| |||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35375002 |
tggcaaattggcctactgaaacaggtagagaagttgccacatagcca----cattcaagcccctcaa------ctatcatgatttttacatacactactt |
35374913 |
T |
|
| Q |
800 |
ttttagttttgta |
812 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35374912 |
ttttagttttgta |
35374900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University