View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18181_low_13 (Length: 220)
Name: NF18181_low_13
Description: NF18181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18181_low_13 |
 | |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1801 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 14248129 - 14248315
Alignment:
| Q |
17 |
aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcggc |
116 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14248129 |
aaaaaaaactaagcctaactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcggc |
14248228 |
T |
|
| Q |
117 |
gtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgagg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
14248229 |
gtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcttgagg |
14248315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 14253944 - 14254107
Alignment:
| Q |
22 |
aaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcggcgtttg |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |
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|
| T |
14253944 |
aaactcagtctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaa---gcggcgtcgtttg |
14254040 |
T |
|
| Q |
122 |
tggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgc |
188 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| |||||||||||| |||||||| ||||| |
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|
| T |
14254041 |
tggacgttgatggtactttagatggagggatagagatcgacgatggagtaatagcaggagtagctgc |
14254107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 14316667 - 14316850
Alignment:
| Q |
17 |
aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcggc |
116 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |
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|
| T |
14316667 |
aaaaaaaactaagcctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaa---gcggcgtc |
14316763 |
T |
|
| Q |
117 |
gtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgagg |
203 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||| |||||||| || || ||||||||||||||| |||| ||||| |
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|
| T |
14316764 |
gttcgtggacgttgatggtgctttagaaggaggggtagagatcgatgatggagtgatggccggagtggctgcgggggaagcttgagg |
14316850 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 684 - 493
Alignment:
| Q |
17 |
aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcggc |
116 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| || |
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|
| T |
684 |
aaaataaactctgcgtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggtggcagc |
585 |
T |
|
| Q |
117 |
gtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggtgatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |||| |
|
|
| T |
584 |
gtttgtggacgttgatggtgctttagatggtggggtagagatcgccgatggagtaatagcaggagtggctgcgggggaagcttgaggagatg |
493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 316 - 277
Alignment:
| Q |
130 |
gatggtgctttagatggaggggtagagatcgccgatggag |
169 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
316 |
gatggtgcttgagatggaggggtagagatcgacgatggag |
277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 465 - 274
Alignment:
| Q |
17 |
aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcggc |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
465 |
aaaagaaactcagcctaactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcgtc |
366 |
T |
|
| Q |
117 |
gtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgaggtgatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||| |||| ||||| |||| |
|
|
| T |
365 |
gtttgtggacgttgatggtgctttagatggaggggtagagatggacgatggagtaatagcaggggtggctgcgggggaagcttgaggagatg |
274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 3185 - 3371
Alignment:
| Q |
17 |
aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcggc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |
|
|
| T |
3185 |
aaaataaactcagcctaactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggtgccagc |
3284 |
T |
|
| Q |
117 |
gtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgagg |
203 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||| |
|
|
| T |
3285 |
gtttgtgaatgttgatggtgctttagatggaggggtagagatcgccgatggagtaatggcaggagcggctgctggggaagcatgagg |
3371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 3483 - 3536
Alignment:
| Q |
132 |
tggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggc |
185 |
Q |
| |
|
|||||||| ||||||||| |||||||||| ||||||||| | ||||||||||| |
|
|
| T |
3483 |
tggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagtggc |
3536 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 355 - 166
Alignment:
| Q |
23 |
aactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcggcgtttgt |
122 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
355 |
aactcagcctaaatctttacatcatcaaagcagcagttaaaaggacgacagcagcagatccggcaactgtaaatctgttcaaagcggcagcagcgtttgt |
256 |
T |
|
| Q |
123 |
g---------gacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcatgagg |
203 |
Q |
| |
|
| || ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||||| |
|
|
| T |
255 |
ggatgtctgtgatgttgatgatgctttagatggaggggtagagatcgacgatggagtaatggcaggagcagctgctggcgaagcatgagg |
166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 37244881 - 37245021
Alignment:
| Q |
38 |
tctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcggcgtttgtggacgttgatggtgc |
137 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||| |||||||||||||||||||| || |||||||| ||| |||||| |||||||||| |||||||||| |
|
|
| T |
37244881 |
tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaa---gcggcgccgtttgtggatgttgatggtga |
37244977 |
T |
|
| Q |
138 |
tttagatggaggggtagagatcgccgatggagtaattgcaggag |
181 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||| ||||||| |
|
|
| T |
37244978 |
tttagatggaggggtagagatagacgttggagtaatagcaggag |
37245021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 37232674 - 37232766
Alignment:
| Q |
19 |
aataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcg |
111 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
37232674 |
aataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg |
37232766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 37257059 - 37257141
Alignment:
| Q |
33 |
aactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcggcgg |
115 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| |||||||||||||| ||||| || |||||||| ||||||||||||| |
|
|
| T |
37257059 |
aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcgg |
37257141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 37252933 - 37253011
Alignment:
| Q |
32 |
taactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggc |
110 |
Q |
| |
|
|||||||||| | |||||||| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37252933 |
taactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggc |
37253011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 37241876 - 37241927
Alignment:
| Q |
116 |
cgtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatgg |
167 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
37241876 |
cgtttgtgggcgttgatggtgctttagttggaggagtagagatcgacgatgg |
37241927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 37237606 - 37237681
Alignment:
| Q |
36 |
tctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggcg |
111 |
Q |
| |
|
|||||||||||||||||| |||| ||||| || ||||||||||| |||||| || ||||||||||| |||||| |
|
|
| T |
37237606 |
tctctacatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcg |
37237681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 37241923 - 37241974
Alignment:
| Q |
130 |
gatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggag |
181 |
Q |
| |
|
||||||||||||| |||||| |||||||| | |||||||||||| ||||||| |
|
|
| T |
37241923 |
gatggtgctttagttggaggagtagagattgacgatggagtaatagcaggag |
37241974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 37245128 - 37245169
Alignment:
| Q |
129 |
tgatggtgctttagatggaggggtagagatcgccgatggagt |
170 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
37245128 |
tgatggtgcttgagatggaggagtagagatcgacgatggagt |
37245169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 37242111 - 37242163
Alignment:
| Q |
129 |
tgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggag |
181 |
Q |
| |
|
||||||||||| ||||||||| || ||||||| | ||||||||| |||||||| |
|
|
| T |
37242111 |
tgatggtgcttgagatggaggagttgagatcgacaatggagtaactgcaggag |
37242163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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