View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18181_low_3 (Length: 720)

Name: NF18181_low_3
Description: NF18181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18181_low_3
NF18181_low_3
[»] chr7 (8 HSPs)
chr7 (359-661)||(41744236-41744538)
chr7 (6-290)||(13477146-13477432)
chr7 (20-178)||(20026443-20026602)
chr7 (75-202)||(37945374-37945501)
chr7 (116-164)||(4531365-4531413)
chr7 (3-134)||(2889083-2889215)
chr7 (347-458)||(37945650-37945762)
chr7 (123-230)||(15866879-15866986)
[»] chr4 (12 HSPs)
chr4 (3-263)||(30275533-30275793)
chr4 (3-172)||(11556393-11556562)
chr4 (3-290)||(15872332-15872623)
chr4 (3-290)||(15889924-15890215)
chr4 (93-391)||(11097966-11098268)
chr4 (20-172)||(18220292-18220445)
chr4 (20-290)||(12229238-12229512)
chr4 (3-173)||(18556402-18556572)
chr4 (259-316)||(30279028-30279085)
chr4 (365-604)||(34635381-34635625)
chr4 (75-158)||(16284586-16284670)
chr4 (347-458)||(17337880-17337992)
[»] chr2 (8 HSPs)
chr2 (168-364)||(29637297-29637496)
chr2 (93-457)||(24786334-24786701)
chr2 (450-578)||(18784962-18785090)
chr2 (20-172)||(23655955-23656108)
chr2 (115-172)||(44586051-44586108)
chr2 (3-131)||(29637503-29637635)
chr2 (20-292)||(18986927-18987202)
chr2 (115-179)||(32251782-32251846)
[»] chr5 (4 HSPs)
chr5 (3-174)||(23960393-23960564)
chr5 (27-171)||(13937393-13937539)
chr5 (3-202)||(24759207-24759405)
chr5 (3-164)||(24831506-24831667)
[»] chr6 (6 HSPs)
chr6 (20-290)||(8403292-8403570)
chr6 (117-458)||(9191214-9191560)
chr6 (3-173)||(19546826-19546996)
chr6 (3-164)||(7682086-7682247)
chr6 (93-393)||(14970316-14970620)
chr6 (3-160)||(10906213-10906370)
[»] chr3 (19 HSPs)
chr3 (20-194)||(19908119-19908294)
chr3 (3-290)||(16359063-16359354)
chr3 (3-178)||(14481107-14481282)
chr3 (20-202)||(22924301-22924483)
chr3 (19-289)||(21975547-21975821)
chr3 (19-289)||(21997978-21998252)
chr3 (20-290)||(19185209-19185481)
chr3 (19-202)||(22160233-22160416)
chr3 (3-202)||(13926337-13926536)
chr3 (3-194)||(13928735-13928926)
chr3 (93-178)||(17791344-17791429)
chr3 (93-178)||(19099784-19099869)
chr3 (383-458)||(5943809-5943884)
chr3 (21-290)||(27870014-27870286)
chr3 (114-267)||(5943553-5943708)
chr3 (128-230)||(16642704-16642805)
chr3 (123-230)||(14054653-14054760)
chr3 (123-230)||(14062382-14062489)
chr3 (340-406)||(27870331-27870397)
[»] chr8 (2 HSPs)
chr8 (20-178)||(29294323-29294482)
chr8 (376-435)||(29294061-29294120)
[»] scaffold0385 (1 HSPs)
scaffold0385 (20-292)||(14563-14839)
[»] scaffold0166 (1 HSPs)
scaffold0166 (3-202)||(1701-1899)
[»] scaffold0737 (1 HSPs)
scaffold0737 (20-178)||(3165-3324)
[»] scaffold0094 (1 HSPs)
scaffold0094 (20-285)||(4204-4471)
[»] scaffold0118 (1 HSPs)
scaffold0118 (20-231)||(10501-10714)
[»] scaffold0145 (1 HSPs)
scaffold0145 (20-158)||(13047-13187)
[»] chr1 (3 HSPs)
chr1 (115-191)||(1566683-1566758)
chr1 (123-230)||(13881859-13881965)
chr1 (123-230)||(51626595-51626702)
[»] scaffold0319 (1 HSPs)
scaffold0319 (123-230)||(13172-13278)
[»] scaffold0218 (1 HSPs)
scaffold0218 (123-230)||(14784-14890)
[»] scaffold0091 (1 HSPs)
scaffold0091 (123-230)||(29465-29571)
[»] scaffold0003 (1 HSPs)
scaffold0003 (128-230)||(131189-131290)
[»] scaffold0048 (1 HSPs)
scaffold0048 (114-172)||(87201-87259)
[»] scaffold1001 (1 HSPs)
scaffold1001 (20-128)||(1536-1645)
[»] scaffold0290 (1 HSPs)
scaffold0290 (20-85)||(13694-13759)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 359 - 661
Target Start/End: Complemental strand, 41744538 - 41744236
Alignment:
Q  359 tattagaataaagtatttagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaatgttgacgtagaaa 458  Q
    |||||||||||||||| | ||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||  ||||||| |||||||    
T  41744538 tattagaataaagtatcttgagagtctagagtagacgagaagatagagtatgatcgtaagatgaataataaaataaagtacagagatgttgatgtagaaa 41744439  T
Q  459 caggtcttgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgatcgtaaacaagag 558  Q
    |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  41744438 cgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgaccataaacaagag 41744339  T
Q  559 taataaggagtaatgtcataaacatatatataaatacatatgatgagaaaagacgatgtctattttagggtaaacaatgagaaatgatggtgtctattgt 658  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41744338 taatgaggactaatttcataaacatatatataaatacatatgatgagaaaagacgacgtctattttagggtaaacaatgagaaatgatggtgtctattgt 41744239  T
Q  659 gta 661  Q
    |||    
T  41744238 gta 41744236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 13477146 - 13477432
Alignment:
Q  6 aagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatg 104  Q
    ||||||||||| | ||||||| ||||| |||||||||| |||  ||| ||||| | | ||||| |||| ||||||| ||| |||||  ||||||||| ||    
T  13477146 aagagataatagt-tataatggttgacaataataataatgactagtatcgagagaatgaaaccttaaattataatgtagtcttagtgaggaaagttgctg 13477244  T
Q  105 acgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag-ag 203  Q
    | ||| ||| |||||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||| | | |  || |||||| |  ||| |||| |     
T  13477245 aagtccaaattaatgataaggtgagataataagtttaatttagaacgaagttaagattaggggaatggacaacg-catggatgactacaaacatgagaac 13477343  T
Q  204 gaagtactacgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 290  Q
     ||||| || ||||||||||  ||||| || ||  ||||| |||||| ||| |||||||||||||| |||| |||||||||||| ||||    
T  13477344 aaagtaataagatataaagtcattttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaagag 13477432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 20026602 - 20026443
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    ||||| ||| |||||| ||||||| |||| ||| ||||| | ||||||| | || || |||| |||  ||||  ||||||||| ||| ||| ||| ||||    
T  20026602 tataaggttagacgatgataataatgaccagtatcgagagaataaaacctttaattagaatggagtcgtagtgaggaaagttgttgaagtcgaaattaat 20026503  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 178  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  20026502 gatagggtgagataataactctaaattagaatgaagttaagattaggggaatggacgatg 20026443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 37945374 - 37945501
Alignment:
Q  75 tataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggt 173  Q
    ||||||||||| |||||  ||||||||| ||| ||  |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||  ||||| |    
T  37945374 tataatgaagtcttagtgaggaaagttgctgaagttgaaagtaatgaaaaggtgagataataactttaatttagaatcaagttaagattaggagaatgat 37945473  T
Q  174 cgatgttatagatgacgatgaacgtgaga 202  Q
     |  | |||||||||||||||| ||||||    
T  37945474 tggcg-tatagatgacgatgaatgtgaga 37945501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 4531365 - 4531413
Alignment:
Q  116 aatgataaggtgagataataactttaaattagaatgaagttaagattag 164  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4531365 aatgataaggtgagataataactttaaattagaacgaagttaagattag 4531413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 2889083 - 2889215
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagt-tggaaagttg 101  Q
    |||||| ||| || || ||||||| ||||| ||||||||||  | || |||||||| | ||||||||||||||  ||||||||||||||  | |||||||    
T  2889083 gataagggatgatgatttataatgattgacaataataataataatcgataacgagagaataaaaccctaaaatgaaatgaagttttagtgagaaaagttg 2889182  T
Q  102 atgacgtcaaaagtaatgataaggtgagataat 134  Q
     ||| ||||||| ||||||||||  ||||||||    
T  2889183 ttgatgtcaaaaataatgataagtcgagataat 2889215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 347 - 458
Target Start/End: Original strand, 37945650 - 37945762
Alignment:
Q  347 aatatggtatgctattagaa-taaagtatttagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaat 445  Q
    |||| |||||| |||| ||| |||||||  |||||||||||||||||| | ||  | |||| |||  | |||||||||||||||| |||| |||||||||    
T  37945650 aatagggtatgatatttgaaataaagtagatagagagcctagaatagatgcgagaacagagtatgtccgtaagatgaataataaattaaaatagaggaat 37945749  T
Q  446 gttgacgtagaaa 458  Q
    |||||||||||||    
T  37945750 gttgacgtagaaa 37945762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 15866879 - 15866986
Alignment:
Q  123 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 221  Q
    |||| |||||||||||||||| ||| | ||||||||||||||| || | || |||||  ||||||||||| ||||||||||  ||||| || ||||||||    
T  15866879 aggttagataataactttaaaattaaattgaagttaagattagggggacggacgatgc-atagatgacgacgaacgtgagaacaagtaataagatataaa 15866977  T
Q  222 gttgtttta 230  Q
    || ||||||    
T  15866978 gtcgtttta 15866986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 30275533 - 30275793
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttggaaagttga 102  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  30275533 gataagagataatagtatataatgtttgacgataataataacgactggtaacgagatattaaaaccctaaaatataatgaagttttagtgggaaagttga 30275632  T
Q  103 tgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgaga 202  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  30275633 tgacgtcgaaagtaatgataaggtgaaataataactttaaattagaatgaagttaagattataggaatggtcggtgttatagatgacgatgaacgtgaga 30275732  T
Q  203 ggaagtactacgatataaagttgttttaatgggaaataattatgaaagaggtaatgacgat 263  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  30275733 cgaagtactacgatataaagttgttttaatgagaaataattatgaaagagataatgacgat 30275793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 11556562 - 11556393
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||||  |||  |||| | | ||||| | || ||||||| ||| |||||  |||||||||    
T  11556562 gataagaggtaataat-tataatggttgacgataataataacgactagtattgagagaatgaaaccttgaattataatgtagtcttagtgaggaaagttg 11556464  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 172  Q
     ||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11556463 ctgaagtcgaaattaatgatatggtgagataataactttaaattagaatgaagttaagattaggggaatgg 11556393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 15872332 - 15872623
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||| ||||||| | ||||||||||||||||||||||||| ||||| | ||||| | ||||| | | || ||||||||||  |||||  ||||||||     
T  15872332 gataagcgataatagt-tataatgtttgacgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagccttagtgaggaaagttt 15872430  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag 201  Q
     |||  ||||||||| |||||   |||||||||||||||||||||| || |||||||||||||  |||| ||||||| |||||||||||| ||| |||||    
T  15872431 ctgatatcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgag 15872529  T
Q  202 aggaa-gtactacga-tataaagttgt-tttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 290  Q
    |  || ||| || || |||||||| || || |||| ||  |||||||| ||||||| |||||||||||||| || |  ||||||||| ||||||    
T  15872530 aacaaggtaataagattataaagtcgtattaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttggatagag 15872623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 15889924 - 15890215
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||| ||||||| | |||||||||||| |||||||||||| ||||| | ||||| | ||||| | | || ||||||||||  |||||  ||||||||     
T  15889924 gataagcgataatagt-tataatgtttgatgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagccttagtgaggaaagttt 15890022  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag 201  Q
     ||| |||||||||| |||||   |||||||||||||||||||||| || |||||||||||||   ||| ||||||| |||||||||||| ||| |||||    
T  15890023 ctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggaaaatagtcgatg-tatagatgacgacgaatgtgag 15890121  T
Q  202 aggaa-gtactacga-tataaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 290  Q
    |  || ||| || || |||||||| ||||| |||| ||  |||||||| ||||||| |||||||||||||| || |  ||||||||| ||||||    
T  15890122 aacaaggtaataagattataaagtcgttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttgaatagag 15890215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 93 - 391
Target Start/End: Original strand, 11097966 - 11098268
Alignment:
Q  93 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 192  Q
    ||||||||  ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||||  ||| ||||| |     
T  11097966 ggaaagtttctgaagtcaaaattaatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggaagatg-cataaatgactac 11098064  T
Q  193 gaacgtgag-aggaagtactacgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtataga 289  Q
     ||| |||| |  ||||| || || ||||||| |||||| || ||  ||||| |||||| ||  |||||||||||||| | || |||||||||||| |||    
T  11098065 aaacatgagaacaaagtaataagagataaagtcgttttattgagaagaataagtatgaaggaattaatgacgatggtgagttaggacctagttgtaaaga 11098164  T
Q  290 gggaaggcgttataagaattgttaacgaggaagtaagcatctta--aattataatgaagaatatggtatgctattagaataaagtatttagagagcctag 387  Q
    | | || | ||||| ||| || ||| ||  ||||||  ||||||  | | | ||||| ||||| |||||| ||| | |||||||||| ||||| ||||||    
T  11098165 gaggagacattatatgaaatgataatgaacaagtaaatatcttaagactaagaatgaggaataaggtatgatatcaaaataaagtatatagagggcctag 11098264  T
Q  388 aata 391  Q
    ||||    
T  11098265 aata 11098268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 18220292 - 18220445
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttggaaa-gttgatgacgtcaaaagtaat 118  Q
    ||||||| ||| | ||||||||||||||  ||| ||||| | | ||||| | || ||||||| ||| |||||  |||| |||| ||| ||| ||| ||||    
T  18220292 tataatggttgtcaataataataacgactagtatcgagagaatgaaaccttgaattataatgtagtcttagtgagaaaagttgttgaagtcgaaattaat 18220391  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 172  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  18220392 gataaggtgagataataactttatattagaatgaagttaagattaggggaatgg 18220445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 12229512 - 12229238
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttg-gaaagttgatgacgtcaaaagtaat 118  Q
    ||||||||||||||||||||||||| |||||||  || ||| ||||| | | || |||| |||||| |||||   |||||||  ||| | | |||||| |    
T  12229512 tataatgtttgacgataataataacaaccggtattgaaaaaataaaatcttgaattatactgaagtcttagtgaagaaagtttctgaagccgaaagtact 12229413  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa-gtactacgata 217  Q
    ||||| ||||||||||||||| ||||||| || |||||||||||||  |||| ||||||| ||||||||||||  || ||||||  || | | || |||     
T  12229412 gataaagtgagataataacttcaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacaaatgtgagaacaaggaaataagatt 12229314  T
Q  218 taaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 290  Q
    |||||| ||||| |||| ||  |||||||| ||||| | |||||||||||||| || |  ||||||||||||||||    
T  12229313 taaagtcgttttaaatgagaagaataattacgaaagcgttaatgacgatggtgtggaagaacctagttgtatagag 12229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 18556402 - 18556572
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||||| ||||| | |||||||||||||||||||||||| ||| |||| ||||| | | ||||| | || ||||||||||| || ||  || |||||     
T  18556402 gataagaggtaatagt-tataatgtttgacgataataataatgactggtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagttt 18556500  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggt 173  Q
    |||| ||| ||||||||||||| ||| ||||||||||||||||||||| || ||| |||||||  |||||||    
T  18556501 atgaagtcgaaagtaatgataaagtgcgataataactttaaattagaacgaggttcagattaggagaatggt 18556572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 30279028 - 30279085
Alignment:
Q  259 acgatggtgcggtaagacctagttgtatagagggaaggcgttataagaattgttaacg 316  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  30279028 acgatggtgcggtaagacctagttgtatagaggggaggcgttataagaaatgttaacg 30279085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 365 - 604
Target Start/End: Original strand, 34635381 - 34635625
Alignment:
Q  365 aataaagtatttagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaatgttgacgtagaaacaggtc 464  Q
    |||||||||| |||||||| |||||||||  ||||| ||||||||| ||||| || ||||||  | |   | |||||| |||||||||||||||   ||     
T  34635381 aataaagtatctagagagcttagaatagataagaaggtagagcatgttcatatgaggaataaccataatgattagagggatgttgacgtagaaatgagtt 34635480  T
Q  465 ttgttt-atgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggta------atgatgaagaattttatgatcgtaaacaaga 557  Q
     ||||| |||||||| |||||| || ||| || ||||||||||||||| | |||||||||| |      |||||||||| ||||| || |  || |||||    
T  34635481 gtgttttatgaattgaattaataaaaaga-taaggtagtgatataaacttcttgatggggggaggggggatgatgaagagttttacga-ctcaatcaaga 34635578  T
Q  558 gtaataaggagtaatgtcataaacatatatataaatacatatgatga 604  Q
    || || ||| ||||||||||| || ||||||||||||||||||||||    
T  34635579 gtgatgaggggtaatgtcatatacttatatataaatacatatgatga 34635625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 16284586 - 16284670
Alignment:
Q  75 tataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaa 158  Q
    |||||||||||||||||  ||||||||| ||| ||  ||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  16284586 tataatgaagttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaatagaatgaagttaa 16284670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 458
Target Start/End: Complemental strand, 17337992 - 17337880
Alignment:
Q  347 aatatggtatgctattagaa-taaagtatttagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaat 445  Q
    |||| |||||| |||||||| ||||||||  ||||||||||||||||| | || || | |  |||    |||||||| |||||||||||| |||||| ||    
T  17337992 aatagggtatgatattagaaataaagtatacagagagcctagaatagatgcgaggacataatatgtctgtaagatgagtaataaaataaaatagagggat 17337893  T
Q  446 gttgacgtagaaa 458  Q
    |||||||||||||    
T  17337892 gttgacgtagaaa 17337880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 168 - 364
Target Start/End: Complemental strand, 29637496 - 29637297
Alignment:
Q  168 aatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaagttgttttaatgggaaa--taattatgaaagaggtaatgacgatgg 265  Q
    |||||| ||||||| | |||||||||||||||||| |||||| ||  ||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  29637496 aatggttgatgttacaaatgacgatgaacgtgagatgaagtaatataatataaagttgttttaatgagaaaaataattatgaaagaggtaatgacgatgg 29637397  T
Q  266 tgcggtaagacctagttgtatagagggaaggcgttataagaattgttaacgaggaagtaagcatcttaaattat-aatgaagaatatggtatgctattag 364  Q
    || ||||| || | |||||||||| ||||| |||| |||||| |||||| |  ||||||| ||||| ||||||| ||||||||||| |||||| ||||||    
T  29637396 tgaggtaaaacatggttgtatagatggaagacgttctaagaaatgttaatggagaagtaaacatctaaaattatgaatgaagaatagggtatgatattag 29637297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 93 - 457
Target Start/End: Complemental strand, 24786701 - 24786334
Alignment:
Q  93 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 192  Q
    ||||| ||| ||| ||| ||| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||||  ||| ||||| |     
T  24786701 ggaaacttgttgaagtcgaaattaatgataaggtgagataataactataaattagaacgaagttaagattaggggaatgggcgatg-cataaatgactac 24786603  T
Q  193 gaacgtgag-aggaagtactacgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtataga 289  Q
    |||| |||| |  ||||| || || |||||||||||||| || ||  ||||| |||||| ||| |||||||||||||| |||| |||||||||||| |||    
T  24786602 gaacatgagaacaaagtaataagagataaagttgttttattgagaagaataagtatgaaggagttaatgacgatggtgaggtaggacctagttgtaaaga 24786503  T
Q  290 gggaaggcgttataagaattgttaacgaggaagtaagcatctta--aattataatgaagaatatggtatgctattagaataaagtatttagagagcctag 387  Q
    | | || ||||||| | | || ||| ||  ||||||  ||| ||  | | | ||||| |||||  ||||| ||| |||||||||||| ||||  ||||||    
T  24786502 gaggagacgttatatgtaatggtaatgaacaagtaa-tatcataagactaagaatgaggaatagagtatgatatcagaataaagtatatagattgcctag 24786404  T
Q  388 aatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaatgttgacgtagaa 457  Q
    |||||| ||||  |||||||| |    | ||||||||||||||||||| || ||| ||||||||||||||    
T  24786403 aatagatgagagaatagagcacgtctgtgagatgaataataaaataaaataaagggatgttgacgtagaa 24786334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 450 - 578
Target Start/End: Original strand, 18784962 - 18785090
Alignment:
Q  450 acgtagaaacaggtcttgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgatcgt 549  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||| |||||||||| || ||||||| |||||||||| ||| || ||||||||  |||   |    
T  18784962 acgtagaaacaagtcgtgtttatgaaatggattaatcaagaggatagggtagtaatctaaacgtcttgatgggggaaataataaagaatttattgactat 18785061  T
Q  550 aaacaagagtaataaggagtaatgtcata 578  Q
    |||||||||||||||| ||||||||||||    
T  18785062 aaacaagagtaataagaagtaatgtcata 18785090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 23655955 - 23656108
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttg-gaaagttgatgacgtcaaaagtaat 118  Q
    ||||||| |||||||||||||||| |||  ||| ||||| | | ||||  | || ||||||| ||| |||||   |||||||| ||| ||| | | ||||    
T  23655955 tataatggttgacgataataataatgactagtatcgagagaatgaaacattgaattataatgtagtcttagtgaagaaagttgttgaagtcgagattaat 23656054  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 172  Q
     ||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  23656055 aataaggtgagataattactttaaattagaatgaagttaagattaggggaatgg 23656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 44586051 - 44586108
Alignment:
Q  115 taatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 172  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44586051 taatgatgaggtgagataataactttaaattagaatgaagttaagattaggggaatgg 44586108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 29637635 - 29637503
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataa---taacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttg-gaaag 98  Q
    |||||||||||||| | ||||||| |||||||||||||   ||| ||||||||| |||| |||| ||||||||| | ||||||| ||||||| | |||||    
T  29637635 gataagagataatagtttataatgattgacgataataatagtaatgaccggtaatgagatattagaaccctaaagtgtaatgaaattttagtggagaaag 29637536  T
Q  99 ttgatgacgtcaaaagtaatgataaggtgagat 131  Q
    ||  ||||||  ||||||||||||| |||||||    
T  29637535 tttctgacgttgaaagtaatgataatgtgagat 29637503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 18986927 - 18987202
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagt-tggaaagttgatgacgtcaaaagtaat 118  Q
    |||||| ||||||||||||||||| |||||||| ||||| | ||||||| | ||  |||||||||| || ||  || ||||| | || ||| ||||||||    
T  18986927 tataatctttgacgataataataatgaccggtatcgagagaataaaaccttgaataataatgaagtcttggtgagggaagtttaggaagtcgaaagtaat 18987026  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtga-gaggaagtactacgata 217  Q
    ||  ||||| ||||||||||||| ||||||| || ||| |||||||  |||| || || | |||| ||||| ||||| |||| || |||||| || |||     
T  18987027 gacgaggtgcgataataactttagattagaacgaggttcagattaggagaatagttgacg-tataaatgactatgaatgtgaggacgaagtaataagatg 18987125  T
Q  218 taaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagaggg 292  Q
    ||||||    |||||| ||  ||||| |||||| ||| |||||| ||||||| ||||  ||||||||||| ||||||    
T  18987126 taaagtcacgttaatgagaagaataagtatgaaggagttaatgatgatggtgaggtagaacctagttgtaaagaggg 18987202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 32251782 - 32251846
Alignment:
Q  115 taatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgt 179  Q
    ||||||||||||| ||| |||| |||||||||||||| || |||||||||| ||||| |||||||    
T  32251782 taatgataaggtgggatgataattttaaattagaatgtagataagattagaagaatgatcgatgt 32251846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 23960393 - 23960564
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||||| ||||| | ||||| |||||| |||||| ||||||||||||| ||||||| ||| ||| |||  ||||||| |||||| |   |||||||||    
T  23960393 gataagaggtaatagt-tataaagtttgatgataattataacgaccggtatcgagaaaataagaccttaagttataatggagttttggcgaggaaagttg 23960491  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtc 174  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||||    
T  23960492 ctgacgtcaaaagtaatggtaaggtgagataataactttaaattagaatgaagttaaggttggaggcatggtc 23960564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 13937539 - 13937393
Alignment:
Q  27 tttgacgataataataacgaccggtaa-cgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaatgataag 124  Q
    ||||| ||||||||||||||||| ||  |||| || ||||||| | || ||||||||||| |||||  || |||||   || ||| ||||||||||||||    
T  13937539 tttgatgataataataacgaccgatattcgaggaaataaaaccttgaattataatgaagtcttagtgagggaagttttcgaagtcgaaagtaatgataag 13937440  T
Q  125 gtgagataataactttaaattagaatgaagttaagattagaggaatg 171  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  13937439 gtgagataataactttaaattagaatgaagttaagattagaagaatg 13937393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 24759405 - 24759207
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||||| ||||| | |||||| ||||||||||||| |||||||| ||| ||||| | |||  || |||| ||||||||||| ||| |  |||||||||    
T  24759405 gataagaggtaatagt-tataatttttgacgataatattaacgacctgtatcgagagaataactccttaaattataatgaagtcttactgaggaaagttg 24759307  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag 201  Q
     ||| ||| ||||||| |||||| |||||||||||||||||| |||||||| |||||  ||||   ||||||||||| |||||||||| | ||| |||||    
T  24759306 ctgaagtcgaaagtaacgataagatgagataataactttaaaatagaatgaggttaaagttaggataatggtcgatg-tatagatgactacgaatgtgag 24759208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 24831506 - 24831667
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttg-gaaagttg 101  Q
    |||||||| ||||| | ||||||| ||||| |||||||||| |||  ||| ||||| | ||||||| | || ||||||| ||| |||||   ||||||||    
T  24831506 gataagaggtaatagt-tataatggttgacaataataataatgactagtatcgagagaataaaaccttgaattataatgtagtcttagtgaagaaagttg 24831604  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattag 164  Q
     ||| ||||||| |||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  24831605 ttgaagtcaaaattaatgataaggtgagatagtaactttaaattagaacggagttaagattag 24831667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 8403292 - 8403570
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    ||||||||||||| ||||| ||||| ||||||| | ||| | ||||| | | || ||| ||||||  |||||  ||||||||  ||| |||||||||| |    
T  8403292 tataatgtttgacaataatgataacaaccggtatcaagagaataaaatcttgaattatgatgaagccttagtgaggaaagtttctgaagtcaaaagtact 8403391  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaag-----tactac 213  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||  |||| ||||||| |||||||||||| ||| ||||||  |||     || ||     
T  8403392 gataaagtgagataataactttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgagaacaagataattaataa 8403490  T
Q  214 gatataaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 290  Q
    |||||||||| ||||| |||| ||  |||||||| ||||||| |||||||||||||| || |  ||||||||||||||||    
T  8403491 gatataaagtagttttaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttgtatagag 8403570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 117 - 458
Target Start/End: Complemental strand, 9191560 - 9191214
Alignment:
Q  117 atgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag-aggaagtactacga 215  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||  |||||||||||| |||| ||| ||| ||| ||||| | || ||| || ||    
T  9191560 atgataaggtgagattataattttaaattagaatgaagttaagattaggagaatggtcgatg-tatacatggcgacgaaagtgagaacgaggtaataaga 9191462  T
Q  216 tataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagagggaaggcgttataagaattgtta 313  Q
    ||||||||   ||||||| ||  ||||| |||||||||| ||||||| |||||| || |  |||||||| |||| || | || |||| || | | || ||    
T  9191461 tataaagtaactttaatgagaggaataagtatgaaagagttaatgacaatggtgaggaagaacctagttatataaagaggagacgttgtatgtaatgata 9191362  T
Q  314 acgaggaagtaagcatctt--aaattataatgaagaatatggtatgctatta-gaataaagtatttagagagcctagaatagacgagaagatagagcatg 410  Q
    |  |  ||| || ||||||  || | | ||||||||||| |||||| ||| | | ||||||| | |||||| | ||| ||||||||||  |||||  |||    
T  9191361 aaaaataagaaaacatcttgaaactaagaatgaagaatagggtatgatatcagggataaagtttatagagatcttaggatagacgagagaatagattatg 9191262  T
Q  411 atcataagatgaataataaaataaagtagaggaatgttgacgtagaaa 458  Q
      |||||||||||||||||||| |  |||||| |||||||||||||||    
T  9191261 tccataagatgaataataaaatcatatagagggatgttgacgtagaaa 9191214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 19546826 - 19546996
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||||| ||||| | |||||||||||||||||||||||| ||| |||| ||||| | | ||||| | || ||||||||||| || ||  || |||||     
T  19546826 gataagaggtaatagt-tataatgtttgacgataataataatgactggtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagttt 19546924  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggt 173  Q
    |||| ||| ||||||||||| | ||| ||||||||||||||||||||| || ||| |||||||  |||||||    
T  19546925 atgaagtcgaaagtaatgattaagtgcgataataactttaaattagaacgaggttcagattaggagaatggt 19546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 7682086 - 7682247
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||||| ||||| | ||||||| |||||| ||||||||| |||  ||| ||||| | ||||||| | || ||||||| ||| |||||  |||||||||    
T  7682086 gataagaggtaatagt-tataatgattgacgttaataataatgactagtatcgagagaataaaaccttgaattataatgtagtcttagtgaggaaagttg 7682184  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattag 164  Q
     ||| ||||||| |||||||||||| | ||| |||||||||||||||| | ||||||||||||    
T  7682185 ttgaagtcaaaattaatgataaggtaacatagtaactttaaattagaacggagttaagattag 7682247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 93 - 393
Target Start/End: Complemental strand, 14970620 - 14970316
Alignment:
Q  93 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgat 192  Q
    ||||||||| ||| ||||||| |||||||| ||||||||||||||| |||||||||   || ||||||  || ||||||| |||||  ||||||||| |     
T  14970620 ggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatg-catagatgactac 14970522  T
Q  193 gaacgtgag-aggaagtactacgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtataga 289  Q
    |||| |||| |  ||||| || |||||| ||| |||||| || ||  ||||| |||||| ||| ||||||||||||||  |||  | ||||||||| |||    
T  14970521 gaacatgagaacaaagtaataagatatacagtggttttattgagaagaataagtatgaaggagttaatgacgatggtgaagtagtatctagttgtaaaga 14970422  T
Q  290 gggaaggcgttataagaattgttaacgaggaagtaagcatctta--aattataatgaagaatatggtatgctattagaataaagtatttagagagcctag 387  Q
    | |||| ||||||| | | || ||| ||  ||||||  ||||||  | | | ||| | ||||| |||||| ||| |||||||||||| ||||| ||||||    
T  14970421 gagaagacgttatatgtaatgataatgaacaagtaaatatcttaagactaagaattaggaatagggtatggtatcagaataaagtatatagagggcctag 14970322  T
Q  388 aataga 393  Q
    ||||||    
T  14970321 aataga 14970316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 10906213 - 10906370
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttgg-aaagttg 101  Q
    ||||||||||| || | ||||| ||| |||||| |||||||||| | ||| ||||| | ||||||| | || || |||| ||| |||||  | |||||||    
T  10906213 gataagagatattagt-tataaggttagacgatgataataacgatcagtatcgagagaataaaaccttgaattaaaatggagtcttagtgagtaaagttg 10906311  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaaga 160  Q
     ||||||  |  ||||||||||||||| || |||||||||||||||||| |||||||||    
T  10906312 ctgacgttgagggtaatgataaggtgatatgataactttaaattagaatcaagttaaga 10906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 19908119 - 19908294
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttgg-aaagttgatgacgtcaaaagtaat 118  Q
    ||||||| |||| ||||| ||||| ||  ||||| |||| |||| ||||||||||| ||||||||||||| | || ||||||| |||| || |||||||     
T  19908119 tataatgattgatgataacaataatgaatggtaatgagagattagaaccctaaaatgtaatgaagttttattggggaaagttgctgacatcgaaagtaac 19908218  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatga 194  Q
    |||||||||||||||||||||||||||||||  |||||||||||   | |||||||||| ||||| ||||| ||||    
T  19908219 gataaggtgagataataactttaaattagaaataagttaagattttggaaatggtcgatattataaatgacaatga 19908294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 16359063 - 16359354
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||| ||||||| | ||||| ||||||||||||||||||| ||||| | ||||| | ||||| | | || ||||||||||| |||||  ||||||||     
T  16359063 gataagcgataatagt-tataaagtttgacgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagtcttagtgaggaaagttt 16359161  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag 201  Q
     ||| |||||||||| |||||   |||||||||||||||||||||| || |||||||||||||  |||| ||||||| |||||||||||| ||| |||||    
T  16359162 ctgatgtcaaaagtactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgag 16359260  T
Q  202 aggaa-gtactacga-tataaagttgt-tttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 290  Q
    |  || ||| || || |||||||| || || |||| ||  |||||||| ||||||| |||||||||||||| || |  ||||||||| ||||||    
T  16359261 aacaaggtaataagattataaagtcgtattaaatgagaagaataattacgaaagagttaatgacgatggtggggaagaacctagttggatagag 16359354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 14481107 - 14481282
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||||| ||||| | ||||||| |||||||||||||||| |||  ||| ||||| | ||||||| | || ||||||| ||| |||||  |||||||||    
T  14481107 gataagaggtaatagt-tataatggttgacgataataataatgactagtatcgagagaataaaaccttgaattataatgtagtcttagtgaggaaagttg 14481205  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 178  Q
     ||| ||||||| |||||||||||||||| | |||||||||||||||| | |||||||||||| | ||||| |||||    
T  14481206 ttgaagtcaaaattaatgataaggtgagacagtaactttaaattagaacggagttaagattagggaaatggacgatg 14481282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 22924483 - 22924301
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    |||||||||||||||||||||||| ||||| || ||||| | |||  || |||| |||||| |||| |||||  ||||||||| ||| ||| |||||||     
T  22924483 tataatgtttgacgataataataaagaccgatatcgagagaataactccttaaattataataaagtcttagtgaggaaagttgttgaagtcgaaagtaac 22924384  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgaga 202  Q
     ||||| |||||||||||||||||| ||||||||||||||| |||   ||||| |||||| |||| ||||||| ||| ||||||    
T  22924383 tataagatgagataataactttaaaatagaatgaagttaagtttaatagaatgatcgatg-tatatatgacgacgaatgtgaga 22924301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 21975821 - 21975547
Alignment:
Q  19 atataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaa 117  Q
    ||||||||||||| |||||||||||| ||||||| ||||| | ||||| | | || |||||  |||  |||||  ||||||||  ||| ||||| ||||     
T  21975821 atataatgtttgatgataataataacaaccggtatcgagagaataaaatcttgaattataaataagccttagtgaggaaagtttctgaagtcaagagtat 21975722  T
Q  118 tgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa-gtactacgat 216  Q
    |||||| |||||||||||| |||||||||| || |||||||||||||  |||| ||||||| |||||||||||| ||| ||||||  || ||| || |||    
T  21975721 tgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgagaacaaggtaataagat 21975623  T
Q  217 ataaagttgttttaatggga---aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtataga 289  Q
    |||||||  ||||||    |   |||||||| ||||||| |||||||||||||| || |  |||||| ||||||||    
T  21975622 ataaagtcattttaaattaaaagaataattacgaaagagttaatgacgatggtggggaagaacctaggtgtataga 21975547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 21998252 - 21997978
Alignment:
Q  19 atataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaa 117  Q
    ||||||||||||| |||||||||||| ||||||| ||||| | ||||| | | || |||||  |||  |||||  ||||||||  ||| ||||| ||||     
T  21998252 atataatgtttgatgataataataacaaccggtatcgagagaataaaatcttgaattataaataagccttagtgaggaaagtttctgaagtcaagagtat 21998153  T
Q  118 tgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa-gtactacgat 216  Q
    |||||| |||||||||||| |||||||||| || |||||||||||||  |||| ||||||| |||||||||||| ||| ||||||  || ||| || |||    
T  21998152 tgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgagaacaaggtaataagat 21998054  T
Q  217 ataaagttgttttaatggga---aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtataga 289  Q
    |||||||  ||||||    |   |||||||| ||||||| |||||||||||||| || |  |||||| ||||||||    
T  21998053 ataaagtcattttaaattaaaagaataattacgaaagagttaatgacgatggtggggaagaacctaggtgtataga 21997978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 19185481 - 19185209
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    ||||||||||||||||||||||||| || ||||  |||| | ||||| | | || | ||||||||| |||||  ||||||||  | | |||||||||| |    
T  19185481 tataatgtttgacgataataataacaactggtattgagagaataaaatcttgaattgtaatgaagtcttagtgaggaaagtttctaaagtcaaaagtact 19185382  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa-gtactacgata 217  Q
    |||||  |||||||||||||| ||||||| || |||||||||||||  |||| ||||||| ||||||||||   ||| ||||||  || ||| || ||||    
T  19185381 gataaaatgagataataacttcaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacagcgaatgtgagaacaaggtaataagata 19185283  T
Q  218 taaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaag-acctagttgtatagag 290  Q
    |||||||||||| |||| ||  |||||||| |||  || |||||| ||||||| |||||| ||||||||||||||||    
T  19185282 taaagttgttttaaatgagaagaataattacgaa--agttaatgatgatggtg-ggtaagaacctagttgtatagag 19185209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 22160416 - 22160233
Alignment:
Q  19 atataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagttggaaa-gttgatgacgtcaaaagtaa 117  Q
    |||||||||||||||||||||||||| ||||||| ||||| | ||||| |   || |||||  |||  |||||  |||| |||  ||| ||||| ||||     
T  22160416 atataatgtttgacgataataataacaaccggtatcgagagaataaaatctagaattataaataagccttagtgagaaaagtttctgaagtcaagagtat 22160317  T
Q  118 tgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgaga 202  Q
    |||||| |||||||||||| |||||||||| || |||||||||||||  |||| ||||||| |||||||||||| ||| ||||||    
T  22160316 tgataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgaga 22160233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 13926337 - 13926536
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaat-ataatgaagttttagtt-ggaaagtt 100  Q
    |||||||| ||||| | |||||| |||||||||||  |||||||||| || || || | |||  || |||||| |||||||||| ||||   ||||||||    
T  13926337 gataagaggtaatagt-tataatatttgacgataaatataacgaccgatatcgtgagaataactccttaaaattataatgaagtcttagcgaggaaagtt 13926435  T
Q  101 gatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtga 200  Q
    | ||| ||||||||||| |||||| || | ||||||||||||| ||||||||||||||| |||   ||| | |||||  |||||||||||||||| ||||    
T  13926436 gctgaagtcaaaagtaacgataagatggggtaataactttaaaatagaatgaagttaaggttaagagaaggatcgat-atatagatgacgatgaatgtga 13926534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 13928735 - 13928926
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaat-ataatgaagttttagtt-ggaaagtt 100  Q
    |||||||| ||||| | |||||| |||||||||||  ||||||||||||| ||||| | |||  || |||||| |||||||||| || |   ||||||||    
T  13928735 gataagaggtaatagt-tataatatttgacgataaatataacgaccggtatcgagagaataactccttaaaattataatgaagtcttggcgaggaaagtt 13928833  T
Q  101 gatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatga 194  Q
    | ||| ||| ||||||| |||||| || | ||||||||||||| ||||||||||||||| ||||  ||||| |||||  ||||||||| |||||    
T  13928834 gctgaagtcgaaagtaaagataagatggggtaataactttaaaatagaatgaagttaaggttaggagaatgatcgat-atatagatgatgatga 13928926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 17791429 - 17791344
Alignment:
Q  93 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 178  Q
    ||||||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||| |||||    
T  17791429 ggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatg 17791344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 19099869 - 19099784
Alignment:
Q  93 ggaaagttgatgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 178  Q
    ||||||||| ||| ||| ||| ||||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||| |||||    
T  19099869 ggaaagttgctgaagtcgaaactaatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatg 19099784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 383 - 458
Target Start/End: Original strand, 5943809 - 5943884
Alignment:
Q  383 cctagaatagacgagaagatagagcatgatcataagatgaataataaaataaagtagaggaatgttgacgtagaaa 458  Q
    ||||||||||| ||||| |||||| |||  ||||||||||||||||||||||| |||||| |||||||||| ||||    
T  5943809 cctagaatagatgagaaaatagagtatgtccataagatgaataataaaataaaatagagggatgttgacgtcgaaa 5943884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 27870014 - 27870286
Alignment:
Q  21 ataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagt-tggaaagttgatgacgtcaaaagtaatg 119  Q
    |||||||||||||||||||||||  ||||||| ||||| | ||||||| | || ||||||||||| || ||  || || || |||| ||  ||||||||     
T  27870014 ataatgtttgacgataataataataaccggtatcgagagaataaaaccttgaattataatgaagtcttggtgagggaaatttatgaagttgaaagtaatt 27870113  T
Q  120 ataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtga-gaggaagtactacgatat 218  Q
    |  ||||| ||||||||||||| ||||||| || ||| |||||||  ||||||| || | |||| ||||||||||| |||| || |||||| || ||| |    
T  27870114 acgaggtgcgataataactttagattagaacgaggtttagattaggagaatggttgacg-tataaatgacgatgaatgtgaggacgaagtaataagatgt 27870212  T
Q  219 aaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagag 290  Q
    ||||  |  |||||| ||  ||| | |||||| ||| |||||||| ||||| ||||  ||||||||||| ||||    
T  27870213 aaaggcgcgttaatgagaagaattagtatgaaggagttaatgacggtggtgaggtagaacctagttgtaaagag 27870286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 5943553 - 5943708
Alignment:
Q  114 gtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag-aggaagtacta 212  Q
    |||||||||||||| |||||||| || |||||||||  || ||||||||||  |||||||| ||| |||||||||||| ||| ||||| | ||  || ||    
T  5943553 gtaatgataaggtgtgataataatttcaaattagaacaaaattaagattaggagaatggtcaatg-tatagatgacgaggaatgtgagaatgagataata 5943651  T
Q  213 cgatataaagttgttttaatggga--aataattatgaaagaggtaatgacgatggtg 267  Q
     |||||||||| | ||||||| ||  ||||| | |||||||| ||||||| ||||||    
T  5943652 agatataaagtcgctttaatgagaagaataagtttgaaagagttaatgacaatggtg 5943708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 16642805 - 16642704
Alignment:
Q  128 agataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaagttgt 226  Q
    |||||||||| ||||| ||| ||||||||||||||||| |||  || |||||| ||||||||||| ||||||||||  ||||| || |||||||||| ||    
T  16642805 agataataacattaaaattaaaatgaagttaagattaggggac-ggacgatgt-atagatgacgacgaacgtgagaacaagtaataagatataaagtcgt 16642708  T
Q  227 ttta 230  Q
    ||||    
T  16642707 ttta 16642704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 14054653 - 14054760
Alignment:
Q  123 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 221  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| || | || |||||  |||| |||||| ||||||||||  ||||| || |||||||     
T  14054653 aggttagataataactttaaaattaaaatgaagttaagattagggggacggacgatg-cataggtgacgacgaacgtgagaacaagtaataagatataag 14054751  T
Q  222 gttgtttta 230  Q
    || ||||||    
T  14054752 gtcgtttta 14054760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 14062382 - 14062489
Alignment:
Q  123 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 221  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| || | || |||||  |||| |||||| ||||||||||  ||||| || ||||||||    
T  14062382 aggttagataataactttaaaattaaaatgaagttaagattagggggacggacgatg-cataggtgacgacgaacgtgagaacaagtaataagatataaa 14062480  T
Q  222 gttgtttta 230  Q
     | ||||||    
T  14062481 ttcgtttta 14062489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 27870331 - 27870397
Alignment:
Q  340 aatgaagaatatggtatgctattagaataaagtatttagagagcctagaatagacgagaagatagag 406  Q
    ||||| |||||||||||| ||| | |||||||||| || ||| ||||||||||| ||||| ||||||    
T  27870331 aatgaggaatatggtatgatatcataataaagtatatatagatcctagaatagatgagaaaatagag 27870397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 29294482 - 29294323
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    ||||||| ||||||||||||||||||||||||| ||||| | | |||||  ||| |||| |||||| | |||  ||||||||| ||| ||||||  ||||    
T  29294482 tataatgattgacgataataataacgaccggtatcgagagaatgaaacctcaaattatagtgaagtctcagtgaggaaagttgctgaagtcaaatttaat 29294383  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 178  Q
     |||||||||||||||||||||||||||| | |||||||||| ||| ||||||| |||||    
T  29294382 tataaggtgagataataactttaaattaggacgaagttaagagtaggggaatggacgatg 29294323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 29294120 - 29294061
Alignment:
Q  376 tagagagcctagaatagacgagaagatagagcatgatcataagatgaataataaaataaa 435  Q
    |||||||||||||||||| ||||| |||||| |||  ||||| |||||||||||||||||    
T  29294120 tagagagcctagaatagatgagaaaatagagtatgcccataaaatgaataataaaataaa 29294061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 14839 - 14563
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    ||||||||||||||||||||||||| || |||||||||| | ||||| | | || ||||| ||||  |||||  ||||| ||  ||| |||||||||| |    
T  14839 tataatgtttgacgataataataacaactggtaacgagagaataaaatcttgaattataaagaagccttagtgaggaaattttctgaagtcaaaagtatt 14740  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa-gtactacgata 217  Q
    ||||| |||||||||||| |||||||||| || |||||||||||||  |||  ||||||| |||||||||||| ||| ||||||  || ||| || ||||    
T  14739 gataaagtgagataataaatttaaattaggattaagttaagattaggagaaaagtcgatg-tatagatgacgacgaatgtgagaacaaggtaataagata 14641  T
Q  218 taaagttgtttt-aatggga--aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgtatagaggg 292  Q
    |||||| ||||| |||| ||  |||||| | ||||||| |||| ||||||||| || |  |||||| ||| |||||||    
T  14640 taaagtcgttttaaatgagaagaataatcacgaaagagttaataacgatggtggggaagaacctaggtgtctagaggg 14563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 1899 - 1701
Alignment:
Q  3 gataagagataataatatataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttg 101  Q
    |||||||| ||||| | |||||| ||||||||||||| |||||||| ||| ||||| | |||  || |||| ||||||||||| ||| |  |||||||||    
T  1899 gataagaggtaatagt-tataatttttgacgataatattaacgacctgtatcgagagaataactccttaaattataatgaagtcttactgaggaaagttg 1801  T
Q  102 atgacgtcaaaagtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgag 201  Q
     ||| ||| ||||||| |||||| |||||||||||||||||| |||||||| |||||  ||||   ||||||||||| |||||||||| | ||| |||||    
T  1800 ctgaagtcgaaagtaacgataagatgagataataactttaaaatagaatgaggttaaagttaggataatggtcgatg-tatagatgactacgaatgtgag 1702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 3165 - 3324
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    ||||||| |||||||||||||||| ||| |||| | ||| | | ||||| | || |||| |||||| | | |  ||||||||| ||| ||| ||  ||||    
T  3165 tataatggttgacgataataataatgactggtatcaagagaatgaaaccttgaattatagtgaagtctcaatgaggaaagttgttgaagtctaatttaat 3264  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatg 178  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||    
T  3265 gataaggtgagataataactttaaattagaacgaagttaagattaggggaatggacgatg 3324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 4204 - 4471
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    |||||||||||||||||||||||| |||  ||| ||||| | | ||||| | || ||||||||||| || ||  || ||||| |||| ||| ||||||||    
T  4204 tataatgtttgacgataataataatgactagtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaagtaat 4303  T
Q  119 gataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtga-gaggaagtactacgata 217  Q
    ||| | ||| |||||||||||||||||||||||| ||| | |||||  |||||||  | | ||||||||||||| || |||| || |||||| || |||     
T  4304 gatcaagtgcgataataactttaaattagaatgaggttcaaattaggagaatggtttacg-tatagatgacgatcaatgtgaggacgaagtaataagatg 4402  T
Q  218 taaagttgttttaatggga-aataattatgaaagaggtaatgacgatggtgcggtaagacctagttgta 285  Q
    ||||| ||  |||||| || ||||  |||||| ||| |||||||||||||  ||||  |||||||||||    
T  4403 taaaggtgcattaatgagataatatgtatgaaggagttaatgacgatggttaggtagaacctagttgta 4471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 10714 - 10501
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaat 118  Q
    ||||||||||||||||||||||||| || | ||  |||| | ||||| | | || ||||||||||  |||||  ||||||||  ||| || |||||||||    
T  10714 tataatgtttgacgataataataacaacagatattgagagaataaaatcttgaattataatgaagcattagtgaggaaagtttctgaagttaaaagtaat 10615  T
Q  119 gataaggtgagataataactttaaattagaatgaa-gttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaa-gtactacgat 216  Q
    | ||| ||||||||||| ||||||||||| || || |||||||||||  |||| ||||||| |||||||||||| ||| ||||||  || ||| || |||    
T  10614 ggtaaagtgagataatagctttaaattaggattaaggttaagattaggagaatagtcgatg-tatagatgacgacgaatgtgagaacaaggtaataagat 10516  T
Q  217 ataaagttgttttaa 231  Q
    ||||||| |||||||    
T  10515 ataaagtcgttttaa 10501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 13187 - 13047
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaat-ataatgaagttttagtt-ggaaagttgatgacgtcaaaagtaa 117  Q
    |||||||||||| |||||  |||||||| | || ||||| | |||  || |||||| ||||||||||||||||  ||||||||| ||| ||  |||||||    
T  13187 tataatgtttgatgataaatataacgactgatatcgagagaataactccttaaaattataatgaagttttagtgaggaaagttgttgaagttgaaagtaa 13088  T
Q  118 tgataaggtgagataataactttaaattagaatgaagttaa 158  Q
     |||||| |||||||||||||||||| ||||||||||||||    
T  13087 cgataagatgagataataactttaaaatagaatgaagttaa 13047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 1566683 - 1566758
Alignment:
Q  115 taatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatggtcgatgttatagatgacga 191  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||  |||||||||||    
T  1566683 taatggtaaggtgggataataactttaaattagaacgaagttaagattagaggaatggacgatg-catagatgacga 1566758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 13881859 - 13881965
Alignment:
Q  123 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 221  Q
    |||| |||||||||| ||||| ||| ||||||||||||||||| |||  || |||||| ||||||||||| ||||||||||  ||||| || ||||||||    
T  13881859 aggttagataataacattaaaattaaaatgaagttaagattaggggac-ggacgatgt-atagatgacgacgaacgtgagaacaagtaataagatataaa 13881956  T
Q  222 gttgtttta 230  Q
    || ||||||    
T  13881957 gtcgtttta 13881965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 51626595 - 51626702
Alignment:
Q  123 aggtgagataataactttaaatt-agaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 221  Q
    |||| |||||||||||||||||| | |||||||||| |||||| |  | || |||||| ||||||||||| ||||||||||  ||||| || ||||||||    
T  51626595 aggttagataataactttaaatttaaaatgaagttatgattagggagacggacgatgt-atagatgacgacgaacgtgagaacaagtaataagatataaa 51626693  T
Q  222 gttgtttta 230  Q
    || ||||||    
T  51626694 gtcgtttta 51626702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 13172 - 13278
Alignment:
Q  123 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 221  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| | || || |||||| ||||||||||| |||| |||||  |||||||| ||||||||    
T  13172 aggttagataataactttaaaattaaaatgaagttaagattag-gaaacggacgatgt-atagatgacgacgaacatgagaacaagtactaagatataaa 13269  T
Q  222 gttgtttta 230  Q
    || ||||||    
T  13270 gtcgtttta 13278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 14890 - 14784
Alignment:
Q  123 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 221  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| |||  || |||||| ||||||||||| ||||||||||  || || || ||||||||    
T  14890 aggttagataataactttaaaattaaaatgaagttaagattaggggac-ggacgatgt-atagatgacgacgaacgtgagaacaactaataagatataaa 14793  T
Q  222 gttgtttta 230  Q
    || ||||||    
T  14792 gtcgtttta 14784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 29571 - 29465
Alignment:
Q  123 aggtgagataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaa 221  Q
    |||| |||||||||||||||| ||| ||||||||||||||||| |||  || |||||| ||||||||||| ||||||| ||  ||||| || ||||||||    
T  29571 aggttagataataactttaaaattaaaatgaagttaagattaggggac-ggacgatgt-atagatgacgacgaacgtgtgaacaagtaataagatataaa 29474  T
Q  222 gttgtttta 230  Q
    || ||||||    
T  29473 gtcgtttta 29465  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 131290 - 131189
Alignment:
Q  128 agataataactttaaa-ttagaatgaagttaagattagaggaatggtcgatgttatagatgacgatgaacgtgagaggaagtactacgatataaagttgt 226  Q
    |||||||||||||||| ||| ||||||||||||||||| || | || ||||| |||| ||||||| ||||||||||  ||||| || |||||||||| ||    
T  131290 agataataactttaaaattaaaatgaagttaagattag-gggacggacgatg-tataaatgacgacgaacgtgagaacaagtaataagatataaagtcgt 131193  T
Q  227 ttta 230  Q
    ||||    
T  131192 ttta 131189  T

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Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 87201 - 87259
Alignment:
Q  114 gtaatgataaggtgagataataactttaaattagaatgaagttaagattagaggaatgg 172  Q
    ||||||||||  |||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  87201 gtaatgataatatgagatgataactttaaattagaatcaagttaagagtagaagaatgg 87259  T

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Target: scaffold1001 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 1645 - 1536
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagttttagt-tggaaagttgatgacgtcaaaagtaat 118  Q
    ||||||| ||||||||||||||||||||  ||| ||||| ||| ||||| | || ||||||| ||| || ||  ||||||||| ||| ||| ||| ||||    
T  1645 tataatggttgacgataataataacgactagtatcgagagattgaaaccttgaattataatgtagtcttggtgaggaaagttgttgaagtcgaaattaat 1546  T
Q  119 gataaggtga 128  Q
    ||||| ||||    
T  1545 gataatgtga 1536  T

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Target: scaffold0290 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 13694 - 13759
Alignment:
Q  20 tataatgtttgacgataataataacgaccggtaacgagaaattaaaaccctaaaatataatgaagt 85  Q
    |||||| |||| |||||||||||| |||||||| ||||| | ||||||| | || |||||||||||    
T  13694 tataatctttggcgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagt 13759  T

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