View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18181_low_4 (Length: 522)
Name: NF18181_low_4
Description: NF18181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18181_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 21 - 503
Target Start/End: Complemental strand, 33338782 - 33338299
Alignment:
| Q |
21 |
gttgaagagttgaatcaattatgcgtaccttttttagaatttcaatattcatcttaaatattttcagttaatcatatatcgataaatttatttatgttta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33338782 |
gttgaagagttgaatcaattatgcgtaccttttttagaatttcaatattcatcttaaatattttcagttaatcatatatcgataaatttatttatgttta |
33338683 |
T |
|
| Q |
121 |
taataaatatcatatcatctcttcnnnnnnnnnnnn-tcatatcatatataattgtgtcatataatatcatgtaagaagaaaacaacataatataagata |
219 |
Q |
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| T |
33338682 |
taataaatatcatatcatctcttcaaaaaaaataatatcatatcatatataattgtgtcatataatatcatgtaagaagaaaacaacataatataagata |
33338583 |
T |
|
| Q |
220 |
gttgaaatataacaattattttaaatctcctcnnnnnnnnaactcgatactcaactcaaggatcgactaatctgaaaggtctagtctcaccgtccacttg |
319 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33338582 |
gttgaaatataacaattattttaaatctcctcttttttttaactcgatacttaactcaaggatcgactaatctgaaaggtctagtctcaccgtccacttg |
33338483 |
T |
|
| Q |
320 |
cggatctcttagttgtttaagttgaatgtatagnnnnnnnngaacaagaagttgaatgtatagttaattattaattttgagaaaattggggagttgaact |
419 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33338482 |
cggatctcttagttgtttaagttgaatgtatagttttttttgaacaagaagttgaatgtatagttaattattaattttgagaaaattggggagttgaact |
33338383 |
T |
|
| Q |
420 |
ttgtatggcatctttaaagggatttgaactttgtttgttagattgcaatctcaaactcttgttactgaactccacatcagagac |
503 |
Q |
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| T |
33338382 |
ttgtatagcatctttaaagggatttgaactttgtttgttagattgcaatctcaaactcttgttactgaactccacatcagagac |
33338299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 35127321 - 35127426
Alignment:
| Q |
21 |
gttgaagagttgaatcaattatgcgtaccttttttagaatttcaatattcatcttaaatattttcagttaatcatatatcgataaatttatttatgttta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||| | | ||||| |
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| T |
35127321 |
gttgaagagttgaatcaattatgcgtacc-tttttagaatttaaatattcatcttaaata-tttcagttactcatatattgataaattta-tgaagttta |
35127417 |
T |
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| Q |
121 |
taataaata |
129 |
Q |
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||||||||| |
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| T |
35127418 |
taataaata |
35127426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 35127429 - 35127500
Alignment:
| Q |
179 |
atataatatcatgtaagaagaaaacaacataatataagatagttgaaatataacaattattttaaatctcct |
250 |
Q |
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||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |
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| T |
35127429 |
atataatatactgtaaggagaaaacaacatagtataagatggttgaaatataacaattattttatatctcct |
35127500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 429 - 503
Target Start/End: Original strand, 35127704 - 35127780
Alignment:
| Q |
429 |
atctttaaagggatttgaactttgtttgtt-agattgcaatctcaaactcttg-ttactgaactccacatcagagac |
503 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||| |||| |
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|
| T |
35127704 |
atctttaattggatttgaactttgtttgtttagattgcaatctcaaactcttgtttactgaactccacctcacagac |
35127780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 12275336 - 12275379
Alignment:
| Q |
180 |
tataatatcatgtaagaagaaaacaacataatataagatagttg |
223 |
Q |
| |
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||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
12275336 |
tataatatcatgttagaagaaaacaacatattataagatagttg |
12275379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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