View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18181_low_5 (Length: 470)
Name: NF18181_low_5
Description: NF18181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18181_low_5 |
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| [»] chr6 (11 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 11170234 - 11169765
Alignment:
| Q |
1 |
catatggcgctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttggaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11170234 |
catatggcgctgctgtccatgcttttatagcaagtggtgcgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttggaat |
11170135 |
T |
|
| Q |
101 |
taatatgaaaggggacctcatgagcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11170134 |
taatatgaaaggggacctcatgggcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaaa |
11170035 |
T |
|
| Q |
201 |
gttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11170034 |
gttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtg |
11169935 |
T |
|
| Q |
301 |
ttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11169934 |
ttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatagt |
11169835 |
T |
|
| Q |
401 |
aaatgacaagggaagactgtcacaggaggaagtttataagatgataagagaagctgagaaatacaaagat |
470 |
Q |
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| T |
11169834 |
aaatgacaagggaagactgtcacaggaggaagttgataggatgataagagaagctgacaaatacaaagat |
11169765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 11209056 - 11208587
Alignment:
| Q |
1 |
catatggcgctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttggaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11209056 |
catatggcgctgctgtccatgcttttatagcaagtggtgagatttgtgaaaagtttcaagatttgacattgagggaagtcaatcctttgtcccttggaat |
11208957 |
T |
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| Q |
101 |
taatatgaaaggggacctcatgagcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaa- |
199 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||| |||| ||||| ||| |
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| T |
11208956 |
taatatcaaagggggcctcatgagcgtaataattcctaggaataccacgattcctaccaatatggaagatgtatacaccaccagtgaacccaaccaaaat |
11208857 |
T |
|
| Q |
200 |
agttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggt |
299 |
Q |
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|||| | || ||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
11208856 |
agtt-tatcaatttccgtttatgagggtgagaggcaaacaactaaggacaacaacttgctaggatcttttgagtttgaaattcctccatgtccaaaaggt |
11208758 |
T |
|
| Q |
300 |
gttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatag |
399 |
Q |
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| || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
11208757 |
gatcaaaaattcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggagaaagccttcggaatcgataaaaggtttaaaatag |
11208658 |
T |
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| Q |
400 |
taaatgacaagggaagactgtcacaggaggaagtttataagatgataagagaagctgagaaatacaaagat |
470 |
Q |
| |
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||||||||||||||||||||||| |||||||| || | | |||||| || ||||||||||||||||||||| |
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| T |
11208657 |
taaatgacaagggaagactgtcaaaggaggaaattgagaggatgatcagtgaagctgagaaatacaaagat |
11208587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 11275618 - 11275149
Alignment:
| Q |
1 |
catatggcgctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttggaat |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||| |
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| T |
11275618 |
catatggcgctgctatccatgcttttatattgagtggtgagctttgtgaaaagtttcaagatttgacattgagggaagttaatccattgtccattggaat |
11275519 |
T |
|
| Q |
101 |
taatatgaaaggggacctcatgagcgtaataattcctaggaataccacgattcctaccaatagggaa-aagtcattcaccacagctgaagacaacctaaa |
199 |
Q |
| |
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||| | || ||| |||||| |||| |||| |||||||||| |||||||||||| | |||| |||| |||||||||| || | |||| ||| |
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| T |
11275518 |
taaaacacaatggggaatcatgaaaacaatatttcccaggaataccatgattcctaccaacaaggaagaagt-attcaccacaactatacctaaccaaaa |
11275420 |
T |
|
| Q |
200 |
agttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggt |
299 |
Q |
| |
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| || || | ||| | ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| || | |
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| T |
11275419 |
atttgttgcaattagtatttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctccatgtccagtagat |
11275320 |
T |
|
| Q |
300 |
gttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctgttacggaaaaagcctcgggaattgataaaaggtttaaaatag |
399 |
Q |
| |
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|||| || || |||||||||||||||||| || |||||||||||||| | | |||||| | ||||||| || |||||||||||||||||||||||||| |
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| T |
11275319 |
gttcctcaattggtggtcaacttccaaattgacaatgatggcatcttacagttgtctgtttcagaaaaagacttgggaattgataaaaggtttaaaatag |
11275220 |
T |
|
| Q |
400 |
taaatgacaagggaagactgtcacaggaggaagtttataagatgataagagaagctgagaaatacaaagat |
470 |
Q |
| |
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||||| ||||||||||||||||| | |||||| || | | |||||| | ||||||||||| ||||||||| |
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| T |
11275219 |
taaataacaagggaagactgtcaaaagaggaaattgagaggatgatcaatgaagctgagaagtacaaagat |
11275149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 470
Target Start/End: Complemental strand, 11165602 - 11165538
Alignment:
| Q |
406 |
acaagggaagactgtcacaggaggaagtttataagatgataagagaagctgagaaatacaaagat |
470 |
Q |
| |
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|||| ||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
11165602 |
acaaaggaaggctgtcaaaggaggaagttgataggatgataagagaagctgagaaatacaaagat |
11165538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 11196189 - 11196117
Alignment:
| Q |
214 |
atgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctcc |
286 |
Q |
| |
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|||||||||| ||||||||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
11196189 |
atgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcc |
11196117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 11319818 - 11319866
Alignment:
| Q |
33 |
agtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtca |
81 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
11319818 |
agtggtgagttttgtgaaaagtttcaagatttgacattgagggaagtca |
11319866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 11155746 - 11155697
Alignment:
| Q |
210 |
attcatgtttatgagggtgagaggcaaataactaaggacaacaacttgct |
259 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||| ||| ||||||||||| |
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| T |
11155746 |
attcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgct |
11155697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11196402 - 11196305
Alignment:
| Q |
1 |
catatggcgctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttgga |
98 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||| | || |||| ||| |||||||||| |||| ||| |||| |||||||||||||||| |
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| T |
11196402 |
catatggcgctgctgtccatgcttctatattgagtggtgagtttagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttgga |
11196305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 470
Target Start/End: Complemental strand, 11196012 - 11195933
Alignment:
| Q |
391 |
ttaaaatagtaaatgacaagggaagactgtcacaggaggaagtttataagatgataagagaagctgagaaatacaaagat |
470 |
Q |
| |
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|||||||| ||| ||| ||||||||| ||||| |||||||| || | | |||||| | |||||||||||| ||||||||| |
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| T |
11196012 |
ttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagat |
11195933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11160816 - 11160719
Alignment:
| Q |
1 |
catatggcgctgctgtccatgcttttatagcaagtggtgtgatttgtgaaaagtttcaagatttgacattgagggatgtcaatcctttgtcccttgga |
98 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||| | | |||| ||| |||||||||| |||| ||| |||| |||||||||||||||| |
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| T |
11160816 |
catatggcgctgctgtccatgcttctatattgagtggtgagcgtagtgagaaggttcaagatttactattgtcggaggtcattcctttgtcccttgga |
11160719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 11132471 - 11132411
Alignment:
| Q |
203 |
tatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctagga |
263 |
Q |
| |
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||||| |||||||||||| |||||||| || ||||||||| || ||||||||||||||| |
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| T |
11132471 |
tattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctagga |
11132411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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