View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18181_low_6 (Length: 414)
Name: NF18181_low_6
Description: NF18181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18181_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 67 - 398
Target Start/End: Original strand, 43715005 - 43715336
Alignment:
| Q |
67 |
ctcttttgcagattctgcaaagtacaacaattgagaatcagaaatggacgtcagtctattcctgacaagcatattgtaatttacaagtcttcaacgtgtc |
166 |
Q |
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| T |
43715005 |
ctcttttgcagattctgcaaagtacaacaattgagaaacagaaatggacgtcagtctattcctgccaagcatattgtaatttacaagtcttcaacgtgtc |
43715104 |
T |
|
| Q |
167 |
atagatacggagaaagtgtgacataaagacctgcaacttgatccttgtatggaaccagaagatcaagagtggcacagaatacccggcctaaagcctctcc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43715105 |
atagatacggagaaagtgtgacataaagacctgcaacttgatccttgtatggaaccagaagatcaagagtggcacagaatacctggcctaaagcctctcc |
43715204 |
T |
|
| Q |
267 |
tggcaattgatcagctggaagttccagcaaggatgttaaaccaaaccaacaaacttgcttgccatgttcccagcataaaaatagtcacaagcctgcagtg |
366 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715205 |
tggcaattgatcagatggaagttccagcaaggatgttaaaccaaaccaacaaacttgcttgccatgttcccagcataaaaatagtcacaagcctgcagtg |
43715304 |
T |
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| Q |
367 |
aatagaccttcacaatgctacacaccataact |
398 |
Q |
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| T |
43715305 |
aatagaccttcacaatgctacacatcataact |
43715336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 351
Target Start/End: Complemental strand, 6817527 - 6817371
Alignment:
| Q |
195 |
acctgcaacttgatccttgtatggaaccagaagatcaagagtggcacagaatacccggcctaaagcctctcctggcaattgatcagctggaagttccagc |
294 |
Q |
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||||||||||||||||||||| | ||| ||||||||||| ||||| | |||||||||||| |||||||| || |||||| |||||||||| ||| |||| |
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| T |
6817527 |
acctgcaacttgatccttgtaggcaactagaagatcaagtgtggccctgaatacccggcccaaagcctccccaggcaatagatcagctgggagtgccagt |
6817428 |
T |
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| Q |
295 |
aaggatgttaaaccaaaccaacaaacttgcttgccatgttcccagcataaaaatagt |
351 |
Q |
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|| || ||||||||| || || |||| ||| ||||||||| ||||||| ||||| |
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| T |
6817427 |
aatgaaattaaaccaaggcagcacactttcttctcatgttccctgcataaagatagt |
6817371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 172 - 386
Target Start/End: Complemental strand, 52892561 - 52892347
Alignment:
| Q |
172 |
tacggagaaagtgtgacataaagacctgcaacttgatccttgtatggaaccagaagatcaagagtggcacagaatacccggcctaaagcctctcctggca |
271 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52892561 |
tacggagaatgtgtgacataaagacctgcaacttgatccttgtatgcaaccaggagatcaagagtggcacggaatacccggcctaaagcctctcctggca |
52892462 |
T |
|
| Q |
272 |
attgatcagctggaagttccagcaaggatgttaaaccaaaccaacaaacttgcttgccatgttcccagcataaaaatagtcacaagcctgcagtgaatag |
371 |
Q |
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||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
52892461 |
attgatcagctggaagtgccagcaaggatgttaaaccaaggcagcaaactttcttgccatgttccctgcataaaaatagtcacaagtctgcagtgaatag |
52892362 |
T |
|
| Q |
372 |
accttcacaatgcta |
386 |
Q |
| |
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||||||||| ||||| |
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| T |
52892361 |
accttcacattgcta |
52892347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 52892704 - 52892588
Alignment:
| Q |
67 |
ctcttttgcagattctgcaaagtacaacaattgagaatcagaaatggacgtcagtctattcctgacaagcatattgtaatttacaagtcttcaacgtgtc |
166 |
Q |
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||||| ||||| ||||||||||||||| | | ||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||| ||||| |||| |
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| T |
52892704 |
ctcttctgcagcttctgcaaagtacaatagtagagaaacagaaatggacatcagtttattcctgacaatcatattgtaatttacaagtcctcaacatgtc |
52892605 |
T |
|
| Q |
167 |
atagatacggagaaagt |
183 |
Q |
| |
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| || ||| |||||||| |
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| T |
52892604 |
agagttacagagaaagt |
52892588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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