View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18181_low_8 (Length: 310)

Name: NF18181_low_8
Description: NF18181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18181_low_8
NF18181_low_8
[»] chr1 (2 HSPs)
chr1 (9-291)||(7098705-7098987)
chr1 (12-261)||(7582262-7582511)
[»] chr4 (4 HSPs)
chr4 (9-264)||(13615921-13616174)
chr4 (3-95)||(20297125-20297217)
chr4 (146-261)||(20297268-20297383)
chr4 (11-100)||(52351438-52351527)
[»] chr5 (25 HSPs)
chr5 (17-258)||(17982241-17982482)
chr5 (3-101)||(17418691-17418789)
chr5 (3-99)||(30749116-30749212)
chr5 (22-100)||(30242925-30243003)
chr5 (3-100)||(30435294-30435391)
chr5 (22-100)||(29871658-29871736)
chr5 (23-89)||(30206008-30206074)
chr5 (22-100)||(30482876-30482954)
chr5 (3-101)||(30713956-30714054)
chr5 (145-266)||(30399383-30399504)
chr5 (3-99)||(30677702-30677798)
chr5 (136-261)||(30243027-30243152)
chr5 (136-261)||(30748966-30749091)
chr5 (3-99)||(29852784-29852880)
chr5 (11-99)||(30399550-30399638)
chr5 (127-258)||(30059683-30059814)
chr5 (22-101)||(30059840-30059919)
chr5 (21-100)||(30474853-30474932)
chr5 (22-100)||(30339078-30339156)
chr5 (152-198)||(30522302-30522348)
chr5 (152-198)||(30562642-30562688)
chr5 (121-259)||(30714074-30714212)
chr5 (136-253)||(17418824-17418941)
chr5 (145-196)||(30474760-30474811)
chr5 (136-261)||(30677823-30677948)
[»] chr7 (2 HSPs)
chr7 (11-99)||(26706817-26706905)
chr7 (155-266)||(26706650-26706761)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 7098987 - 7098705
Alignment:
Q  9 caaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098987 caaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggt 7098888  T
Q  109 gatacacctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098887 gatacacctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaag 7098788  T
Q  209 gattatgctttccaagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098787 gattatgctttccaagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttt 7098705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 7582262 - 7582511
Alignment:
Q  12 aggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggtgat 111  Q
    |||||||| |||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||  |     ||||    
T  7582262 aggcttaccaaatgtcggtagtttatctgaagctcaagaagccaacttgatgggtaaaaaagacctcgatgaattatgcttgtcatggttgcacaatgat 7582361  T
Q  112 acacctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggat 211  Q
     || |||| |||||  || |||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||| |    
T  7582362 tcatctgttaagaccactattattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtt 7582461  T
Q  212 tatgctttccaagttggatcagaactcttagtaatttagttactcttgaa 261  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  7582462 tatgcttcccaagttggatcagaactcttggtaatttagttactcttgaa 7582511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 13616174 - 13615921
Alignment:
Q  9 caaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggt 108  Q
    |||||||||||||||| | |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||          
T  13616174 caaaggcttacaaaatataggtagtttatttgaagctcaagaagccaatttaatggataaaaaagacctcgatgaattattcttgtcatggcagcacaaa 13616075  T
Q  109 gatacacctgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaag 208  Q
    ||| || |||||||||| ||| |||| ||||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||| |||||||| |||    
T  13616074 gattcatctgtcaagacccctattattagtgatgatcaagtacttgaagtgcttca-cctc-tccaaatctcaagagcttgaaaatatattcttacaaag 13615977  T
Q  209 gattatgctttccaagttggatcagaactcttagtaatttagttactcttgaagtt 264  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||| |||||    
T  13615976 gattatgcttctcaagttggatcagaactcatagtaatttagttactcttaaagtt 13615921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 20297125 - 20297217
Alignment:
Q  3 gagtagcaaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtc 95  Q
    ||||| |||||||||| || ||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||    
T  20297125 gagtatcaaaggcttaaaagatgttggcagtatatctgaagctcaagaagccaatttgatgggtaaaaaagaccttcatgaattatgcttgtc 20297217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 20297268 - 20297383
Alignment:
Q  146 aagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagtaa 245  Q
    ||||| | |||||||||||||||||  ||||||||||| ||||| ||||| |||  ||  | ||||| || || ||||||||||| |  | |||||||||    
T  20297268 aagtactcgaagtgcttcaacctcagtcaaatctcaagtgcttggaaataaattgctatgatggattgtggttaccaagttggataattattcttagtaa 20297367  T
Q  246 tttagttactcttgaa 261  Q
    ||||||| || |||||    
T  20297368 tttagtttcttttgaa 20297383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 52351527 - 52351438
Alignment:
Q  11 aaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 100  Q
    ||||| || |||||||| | || |||||||| | |  ||| |||||||| ||||||||||||||||||   ||||||||| |||||||||    
T  52351527 aaggcctagaaaatgttagcagcttatctgatgttcgagaggccaatttgatgggtaaaaaagacctccgagaattatgcctgtcatgga 52351438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 17982482 - 17982241
Alignment:
Q  17 tacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggtgatacacc 116  Q
    ||||||||||  ||||||||||||||| | ||||||| ||||| || ||||||||||||||| ||||||||||| ||||||||  |      | | || |    
T  17982482 tacaaaatgtcagtagtttatctgaagttgaagaagcaaattttataggtaaaaaagacctcaatgaattatgcctgtcatggcggcaccaaggttcatc 17982383  T
Q  117 tgtcaagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgc 216  Q
    ||||||||| ||| |||| ||||||||||  ||| ||||||||||||||||||| | |||||| ||| ||||||||||| ||| ||||||||||||||||    
T  17982382 tgtcaagacccctattattagtgatgatcgtgtatttgaagtgcttcaacctcacagaaatcttaagggcttgaaaatatattattaccaaggattatgc 17982283  T
Q  217 tttccaagttggatcagaactcttagtaatttagttactctt 258  Q
    || ||||||||||||||||||||||| |||||| ||||||||    
T  17982282 ttcccaagttggatcagaactcttagcaatttacttactctt 17982241  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 17418691 - 17418789
Alignment:
Q  3 gagtagcaaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaa 101  Q
    ||||| |||||||||| || ||||||||| ||||||||||||| ||||||| || || || ||||||||||||||| | |||||||||||||| |||||    
T  17418691 gagtatcaaaggcttaaaagatgttggtaatttatctgaagctcaagaagctaagttgataggtaaaaaagacctccaagaattatgcttgtcgtggaa 17418789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 30749212 - 30749116
Alignment:
Q  3 gagtagcaaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 99  Q
    ||||| |||||| ||| | |||||||| ||||||||||||||| |||  || ||||| |||||||||||||||||  ||||||||||||||||||||    
T  30749212 gagtatcaaaggattaaacaatgttggcagtttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatgcttgtcatgg 30749116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 30242925 - 30243003
Alignment:
Q  22 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 100  Q
    |||||||| ||||||||||||||| |||  || ||||| |||||||||||||||||  |||||||||||||||||||||    
T  30242925 aatgttggcagtttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatgcttgtcatgga 30243003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 30435391 - 30435294
Alignment:
Q  3 gagtagcaaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 100  Q
    ||||| |||||| ||| | |||||||||||||||||||||||| |||  || ||||| | |||||||||||||||  |||||||||||||||| ||||    
T  30435391 gagtatcaaaggattaaacaatgttggtagtttatctgaagctgaagcggctaatttgaagggtaaaaaagaccttcatgaattatgcttgtcgtgga 30435294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 29871736 - 29871658
Alignment:
Q  22 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 100  Q
    |||||||| ||||||||||||||| |||  || ||||| |||||||||||||||||  || ||||||||||||||||||    
T  29871736 aatgttggcagtttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatcaattatgcttgtcatgga 29871658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 30206074 - 30206008
Alignment:
Q  23 atgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatg 89  Q
    ||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||| | ||||||||    
T  30206074 atgtttgtagtttatctgaagctcaagcagccaatttgatgggtaaaaaagacctccaggaattatg 30206008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 30482954 - 30482876
Alignment:
Q  22 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 100  Q
    |||||||| || |||||||||||| |||  || ||||| |||||||||||||||||  |||||||||||||||||||||    
T  30482954 aatgttggcaggttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatgcttgtcatgga 30482876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 30713956 - 30714054
Alignment:
Q  3 gagtagcaaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaa 101  Q
    ||||| |||||| ||| | |||||||| ||||||| ||||||| |||  || ||||| |||||||||||||||||  ||||||||| ||||||||||||    
T  30713956 gagtatcaaaggattaaacaatgttggcagtttatttgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatacttgtcatggaa 30714054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 30399504 - 30399383
Alignment:
Q  145 caagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagta 244  Q
    |||||| | |||||||||||||||||  ||||||||||| ||||||||||| |||  ||  | |||||||  || ||||||||||| |  | ||||||||    
T  30399504 caagtactcgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataaattactatgacggattatcattaccaagttggataattattcttagta 30399405  T
Q  245 atttagttactcttgaagttgg 266  Q
    |||||||| |||||||| ||||    
T  30399404 atttagtttctcttgaacttgg 30399383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 30677702 - 30677798
Alignment:
Q  3 gagtagcaaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 99  Q
    ||||| |||||| ||| | ||||||| |||||||||||||||| |||  || || || |||| ||||||||||||  ||||||||||||||||||||    
T  30677702 gagtatcaaaggattaaacaatgttgctagtttatctgaagctgaagcggctaaattgatggataaaaaagaccttcatgaattatgcttgtcatgg 30677798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 30243027 - 30243152
Alignment:
Q  136 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 235  Q
    |||| ||| |||||| |||||||||||||||||||  ||||||||||| |||||||||||  ||  ||  | ||||||| ||| ||||||||||| |       
T  30243027 agtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataagtttctatgagggattatccttaccaagttggataattc 30243126  T
Q  236 ctcttagtaatttagttactcttgaa 261  Q
     ||||||||||||| || ||||||||    
T  30243127 ttcttagtaatttaatttctcttgaa 30243152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 30749091 - 30748966
Alignment:
Q  136 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 235  Q
    |||| ||| |||||| |||||||||||||||||||  ||||||||||  |||||| |||| |||  ||  |||||||||  || ||||||||||| |  |    
T  30749091 agtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataatta 30748992  T
Q  236 ctcttagtaatttagttactcttgaa 261  Q
     ||||||||||||| || ||||||||    
T  30748991 ttcttagtaatttaatttctcttgaa 30748966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 29852880 - 29852784
Alignment:
Q  3 gagtagcaaaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 99  Q
    ||||| |||||||||| || |||| || ||||||||||||||| |||  || ||||| |||||||||| |||| |  |||||||||| |||||||||    
T  29852880 gagtatcaaaggcttaaaagatgtgggcagtttatctgaagctgaagcggctaatttgatgggtaaaacagacattcatgaattatgtttgtcatgg 29852784  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 30399638 - 30399550
Alignment:
Q  11 aaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 99  Q
    |||||||| || || |||| ||||||||| ||||| |||  ||  |||| |||||||||||||||||  ||||||||||||||||||||    
T  30399638 aaggcttaaaagattttggcagtttatctcaagctcaagcggctgatttgatgggtaaaaaagaccttcatgaattatgcttgtcatgg 30399550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 30059814 - 30059683
Alignment:
Q  127 cctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagtt 226  Q
    |||||| | |||| ||| |||||| ||||||| |||||||||||  ||||||||||  |||||||||||  ||  ||  | ||||||| ||| |||||||    
T  30059814 cctgttgttagtgttgagcaagtacttgaagttcttcaacctcactcaaatctcaactgcttgaaaataagtttctatgagggattatccttgccaagtt 30059715  T
Q  227 ggatcagaactcttagtaatttagttactctt 258  Q
    |||| |  | |||||||||||||||| |||||    
T  30059714 ggataattattcttagtaatttagtttctctt 30059683  T

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Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 30059919 - 30059840
Alignment:
Q  22 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaa 101  Q
    |||||||| || |||| ||||||| |||  || ||||| |||||||||||||||||  ||||||||| ||||||||||||    
T  30059919 aatgttggcaggttatttgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatacttgtcatggaa 30059840  T

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Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 30474932 - 30474853
Alignment:
Q  21 aaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 100  Q
    |||||||||||| |||| |||||||  | | |||||||| ||||||||||| |||||| | ||||||| |||||||||||    
T  30474932 aaatgttggtagcttatttgaagctcgacatgccaatttgatgggtaaaaaggacctccaagaattatccttgtcatgga 30474853  T

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Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 30339078 - 30339156
Alignment:
Q  22 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 100  Q
    |||||||| || |||||||||||| |||  || ||||| |||||||||||||||||  || ||||||||||||| ||||    
T  30339078 aatgttggcaggttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatcaattatgcttgtcgtgga 30339156  T

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Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 30522302 - 30522348
Alignment:
Q  152 ttgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacat 198  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||    
T  30522302 ttgaagtgcttcaacctcactcaaatctcaagatcttgaaaatacat 30522348  T

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Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 30562642 - 30562688
Alignment:
Q  152 ttgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacat 198  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||    
T  30562642 ttgaagtgcttcaacctcactcaaatctcaagatcttgaaaatacat 30562688  T

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Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 30714074 - 30714212
Alignment:
Q  121 aagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttc 220  Q
    ||||| |||||| | |||| ||| |||||| | |||| ||||||||||||  ||||||||||  |||||| |||| |||  ||  |||||||||  || |    
T  30714074 aagacccctgttgttagtgctgagcaagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcattac 30714173  T
Q  221 caagttggatcagaactcttagtaatttagttactcttg 259  Q
    |||||||||| |  | |||||||||||||||| ||||||    
T  30714174 caagttggataattattcttagtaatttagtttctcttg 30714212  T

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Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 17418824 - 17418941
Alignment:
Q  136 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 235  Q
    |||| ||| ||| || |||||||||||||||||||  ||||||||||| |||||||||||  ||  ||  | ||| |||  || ||||||||||| || |    
T  17418824 agtgctgagcaactacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataacttactatgatggaatattgttaccaagttggataagta 17418923  T
Q  236 ctcttagtaatttagtta 253  Q
     |||||||||||||||||    
T  17418924 ttcttagtaatttagtta 17418941  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 30474811 - 30474760
Alignment:
Q  145 caagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatac 196  Q
    |||||| ||||| |||||||||||||  ||||||||||||| ||||||||||    
T  30474811 caagtacttgaaatgcttcaacctcactcaaatctcaagaggttgaaaatac 30474760  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 30677823 - 30677948
Alignment:
Q  136 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 235  Q
    |||| ||| |||||| ||||||||||| |||||||  ||||||||||  |||||| |||| |||  ||  || ||||||  || ||||||||||| |  |    
T  30677823 agtgctgagcaagtacttgaagtgcttaaacctcactcaaatctcaaatgcttgacaataaattactatgaaagattatcgttaccaagttggataatta 30677922  T
Q  236 ctcttagtaatttagttactcttgaa 261  Q
     ||||||||||||| || ||||||||    
T  30677923 ttcttagtaatttaatttctcttgaa 30677948  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 26706905 - 26706817
Alignment:
Q  11 aaggcttacaaaatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 99  Q
    |||||||| || ||||||| ||||||||||||||| ||||||||||||| ||||| |||||| |||||||  |||||||||||||||||    
T  26706905 aaggcttaaaagatgttggcagtttatctgaagctcaagaagccaatttgatggggaaaaaaaacctcgaaaaattatgcttgtcatgg 26706817  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 26706761 - 26706650
Alignment:
Q  155 aagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagtaatttagttac 254  Q
    ||||||||||||||||  ||||||||||| ||||| ||||| | |  ||| | |||||||  || ||||||||| | || | |||||||||||||||| |    
T  26706761 aagtgcttcaacctcactcaaatctcaagtgcttggaaataaagtactacgacggattatcattaccaagttgggtaagtattcttagtaatttagtttc 26706662  T
Q  255 tcttgaagttgg 266  Q
    ||||||| ||||    
T  26706661 tcttgaacttgg 26706650  T

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