View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18181_low_9 (Length: 297)
Name: NF18181_low_9
Description: NF18181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18181_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 2293925 - 2293649
Alignment:
| Q |
12 |
atgaaagtgggttgtgggtaaccaatgaaaatgggataatgaatgctaatgctaatttgaaaataaaataaaattgaggggtata--cttatnnnnnnnn |
109 |
Q |
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| T |
2293925 |
atgaaagtgtattgtaggtaaccgatgaaaatgggatagtgaatgataatgctaatttgaaaataaaataaatttgtggggtatatacttataaaaaaaa |
2293826 |
T |
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| Q |
110 |
tcaacgaaaaactacaaagcaatcaaacttatattgtgacttg-----gggggctgagagatgttgggcccagtttgattaagaaatgcattcaaatatg |
204 |
Q |
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| T |
2293825 |
tcaacgaaaaactacaaagcaatcaaacttatattgtgacttgtggtggggggcggagagatgttgggcccagtttgattaagaaatgcattcaaatatg |
2293726 |
T |
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| Q |
205 |
taggaaaattgctctaaaaacctctagaattgctcaaaagcatcttgaattttcaaaaacaccttcaacgatagtta |
281 |
Q |
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| T |
2293725 |
taggaaaattgctctttaagcctctagaattgctcaaaagcatcttgaattttcaaaaacaccttcaacgatagtta |
2293649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 36249018 - 36248945
Alignment:
| Q |
208 |
gaaaattgctctaaaaacctctagaattgctcaaaagcatcttgaattttcaaaaacaccttcaacgatagtta |
281 |
Q |
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| T |
36249018 |
gaaaattgctctttagacatctagatttgttcacaaacatcttgaattttcaaaattaccttcaatgatagtta |
36248945 |
T |
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