View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18182_high_5 (Length: 379)
Name: NF18182_high_5
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_high_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 44313999 - 44314369
Alignment:
| Q |
9 |
acatcatcatagaggataccaaccgaaaggagagcagggctaccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaa |
108 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44313999 |
acatcatcatagagaataccaaccgaaaggagagcagggctgccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaa |
44314098 |
T |
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| Q |
109 |
aaggaggtatgataacaaacctaatcgtaaatctggtcacaataaaaataattatgttcctcgtgttactaatcccactttcaaaaatggaaatggagga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44314099 |
aaggaggtatgataacaaacctaatcgtaaatctggtcactataaaaataatcatgttcctcgtgttactaatcccactttcacaaatggaaatggagga |
44314198 |
T |
|
| Q |
209 |
cactgttatgtatgtggtaagataggtcactatgcacctcagtgcagacaccgaaagaagaatgagaatcctcctgaagctaatttggctgaaggagatg |
308 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44314199 |
cattgttatgtatgtggtaagataggtcactatgcacctcagtgcagacaccgaaagaagaatgagaatcctcctgaagccaatttggctgaaggagatg |
44314298 |
T |
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| Q |
309 |
atgacattattgctgcagtcattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactct |
379 |
Q |
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| T |
44314299 |
atgacattattgctgcagttattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactct |
44314369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Complemental strand, 34098893 - 34098523
Alignment:
| Q |
9 |
acatcatcatagaggataccaaccgaaaggagagcagggctaccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaa |
108 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098893 |
acatcatcatagagaataccaaccgaaaggagagcagggctgccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaa |
34098794 |
T |
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| Q |
109 |
aaggaggtatgataacaaacctaatcgtaaatctggtcacaataaaaataattatgttcctcgtgttactaatcccactttcaaaaatggaaatggagga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34098793 |
aaggaggtatgataacaaacctaatcgtaaatctggtcactataaaaataatcatgttcctcgtgttactaatcccactttcacaaatggaaatggagga |
34098694 |
T |
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| Q |
209 |
cactgttatgtatgtggtaagataggtcactatgcacctcagtgcagacaccgaaagaagaatgagaatcctcctgaagctaatttggctgaaggagatg |
308 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34098693 |
cattgttatgtatgtggtaagataggtcactatgcacctcagtgcagacaccgaaagaagaatgagaatcctcctgaagccaatttggctgaaggagatg |
34098594 |
T |
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| Q |
309 |
atgacattattgctgcagtcattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactct |
379 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098593 |
atgacattattgctgcagttattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactct |
34098523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 40565 - 40203
Alignment:
| Q |
17 |
atagaggataccaaccgaaaggagagcagggctaccaaggccagggctttagcttcccaagcaaatctgatccagaacaacactaatcagaaaaggaggt |
116 |
Q |
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|||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |
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| T |
40565 |
atagaggataccaacctaaaggagagcagggctgccaaagccagggctttagcttcccaagcaaatctgatccaaaacaacactaattagaaaaagaggt |
40466 |
T |
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| Q |
117 |
atgataacaaacctaatcgtaaatctggtcacaataaaaataattatgttcctcgtgttactaatcccactttcaaaaatggaaatggaggacactgtta |
216 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
40465 |
atgataacaaacctaatcataaacctggtcacaataaaaataatcatgttcctcgtgttactaatccctctttcgaaaatggaaatggaggacactgtta |
40366 |
T |
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| Q |
217 |
tgtatgtggtaagataggtcactatgcacctcagtgcagacaccgaaagaagaatgagaatcctcctgaagctaatttggctgaaggagatgatgacatt |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40365 |
tgtatgtggtaagaaaggtcactatgcacctcagtgcagacaccgaaagaagaatgagaatcctcctgaagctaatttggctgaaggagatgataacatt |
40266 |
T |
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| Q |
317 |
attgctgcagtcattgctgaagcaaacattgtgactgatgtgaacaaatgggtggtagactct |
379 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40265 |
attgctgcagtcattgctgaagcaaatattgtgactgatgtgaacaaatgggtggtagactct |
40203 |
T |
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