View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18182_high_7 (Length: 362)
Name: NF18182_high_7
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_high_7 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 44314678 - 44314347
Alignment:
| Q |
19 |
cttgtcacaataacctttccccacaaatacattatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314678 |
cttgtcacaataacctttccccacaaatacattatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagcc |
44314579 |
T |
|
| Q |
119 |
actgaaatcagattggtccttatattaggcacatgtaagacatcacttagagccaaggtctttcctgatgtgagcttcaacataactttcccttttcccg |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314578 |
actgaaaccagattggtccttatattaggcacatgtaagacatcacttagagccaaggtctttcctgatgtgagcttcaacataactttcccttttcccg |
44314479 |
T |
|
| Q |
219 |
aaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagcacatatatgtcg |
318 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314478 |
aaacagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagcacatatatgtcg |
44314379 |
T |
|
| Q |
319 |
ggtagctccagagtctaccacccatttgttca |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
44314378 |
ggtagctccagagtctaccacccatttgttca |
44314347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 34098214 - 34098545
Alignment:
| Q |
19 |
cttgtcacaataacctttccccacaaatacattatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagcc |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098214 |
cttgtcacaataacctttccccacaaatacattatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagcc |
34098313 |
T |
|
| Q |
119 |
actgaaatcagattggtccttatattaggcacatgtaagacatcacttagagccaaggtctttcctgatgtgagcttcaacataactttcccttttcccg |
218 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098314 |
actgaaaccagattggtccttatattaggcacatgtaagacatcacttagagccaaggtctttcctgatgtgagcttcaacataactttcccttttcccg |
34098413 |
T |
|
| Q |
219 |
aaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagcacatatatgtcg |
318 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098414 |
aaacagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagcacatatatgtcg |
34098513 |
T |
|
| Q |
319 |
ggtagctccagagtctaccacccatttgttca |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
34098514 |
ggtagctccagagtctaccacccatttgttca |
34098545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 39894 - 40225
Alignment:
| Q |
19 |
cttgtcacaataacctttccccacaaatacattatcttttgtcattacaatcttgtcagattcaaatgacactttaatcccacccttgctcaaaagagcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
39894 |
cttgtcacaataacctttccccacaaatacattatcttttgtcattacaatcttgttagactcaaatgacactttaatcccacccttgctcaaacgagcc |
39993 |
T |
|
| Q |
119 |
actgaaatcagattggtccttatattaggcacatgtaagacatcacttagagccaaggtctttcctgatgtgagcttcaacataactttcccttttcccg |
218 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39994 |
actgaaattagattggtccttatattaggcacatgtaagacatcacttaaagccaaggtcttttctgatgtgagcttcaacataactttcccttttcccg |
40093 |
T |
|
| Q |
219 |
aaacagcagcagtttgagagtcaccaaggtaaaccagttcttctccatcccccacagtattgtaggaggtgaaggcatccttagtagcacatatatgtcg |
318 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094 |
aaaaagcagcagttcgagagtcaccaaggtaaaccagttcttctccatcccccacaatattgtaggaggtgaaggcatccttagtagcacatatatgtcg |
40193 |
T |
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| Q |
319 |
ggtagctccagagtctaccacccatttgttca |
350 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40194 |
ggtagctccagagtctaccacccatttgttca |
40225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 19430362 - 19430289
Alignment:
| Q |
27 |
aataacctttccccacaaatacattatcttttgtcattacaatcttgtcagattcaaatgacactttaatccca |
100 |
Q |
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|||| ||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
19430362 |
aatagccttttcccacaaatttatttttctttgtcattacaatcttgtcagattcaaatgacacattaacccca |
19430289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 41397476 - 41397517
Alignment:
| Q |
56 |
tttgtcattacaatcttgtcagattcaaatgacactttaatc |
97 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||| |
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| T |
41397476 |
tttgtcgttacaatcttgtcagatttaaatgacactttaatc |
41397517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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