View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18182_low_11 (Length: 299)
Name: NF18182_low_11
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 39559241 - 39558954
Alignment:
| Q |
1 |
cgtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559241 |
cgtaaggattacatcctttgcttccaactcctctagaatgggacaaacagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaag |
39559142 |
T |
|
| Q |
101 |
tgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559141 |
tgaagcacttttagcgagggaagatcgacgaaaggaacttcttcattcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaacta |
39559042 |
T |
|
| Q |
201 |
aagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctcgtgtcgtaatgattaaatcctttgcttc |
288 |
Q |
| |
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| T |
39559041 |
aagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctcgtgttgtaatgattaaatcctttgcttc |
39558954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 39558976 - 39558718
Alignment:
| Q |
2 |
gtaaggattacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagt |
101 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||| || ||| ||| || | ||| |||||||| ||||| |
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| T |
39558976 |
gtaatgattaaatcctttgcttccaactcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagt |
39558877 |
T |
|
| Q |
102 |
gaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaa |
201 |
Q |
| |
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|||| ||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| || |
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| T |
39558876 |
gaaggacttttagcaagggaagattaacgaaaggaa---cttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaa |
39558780 |
T |
|
| Q |
202 |
agaaggcaatgtggttttggattta---tggcagagatcgatgcttaggttttcaactcctc |
260 |
Q |
| |
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|| ||||| | || | | ||| ||| | |||||||| ||||||||||||||||||||||| |
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| T |
39558779 |
agcaggcagtatgatatcggagttatacttgcagagattgatgcttaggttttcaactcctc |
39558718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 50814561 - 50814322
Alignment:
| Q |
17 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| | |
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|
| T |
50814561 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg |
50814462 |
T |
|
| Q |
117 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggt |
216 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
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| T |
50814461 |
agggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggt |
50814365 |
T |
|
| Q |
217 |
tttggatttatggcagagatcgatgcttaggttttcaactcct |
259 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||| |
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|
| T |
50814364 |
ttcgttaagatggcagagatttatgcttaggttttcaactcct |
50814322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 50861303 - 50861542
Alignment:
| Q |
17 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||| | || |||| | ||||| || ||||||||| ||||||||| |||||||| | |
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|
| T |
50861303 |
tttgcttccaacttctctagaatgggacaactagatagaagtttcatcaagtactcaggacatgtgaaagtgacagattctaagtgaaggacttttagtg |
50861402 |
T |
|
| Q |
117 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggt |
216 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
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|
| T |
50861403 |
agggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaagaaggcagtgtggt |
50861499 |
T |
|
| Q |
217 |
tttggatttatggcagagatcgatgcttaggttttcaactcct |
259 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||||||| |
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|
| T |
50861500 |
ttcgttaagatggcagagatttatgcttaggttttcaactcct |
50861542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 50814843 - 50814636
Alignment:
| Q |
8 |
attacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| || | |||||||| |||||||||||| ||||||||| | |
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|
| T |
50814843 |
attacatcctttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaagga |
50814744 |
T |
|
| Q |
108 |
cttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaagg |
207 |
Q |
| |
|
|||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||||||| ||||||| | |||||||| |
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|
| T |
50814743 |
cttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaagg |
50814647 |
T |
|
| Q |
208 |
caatgtggttt |
218 |
Q |
| |
|
|| | |||||| |
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|
| T |
50814646 |
cagtatggttt |
50814636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 50861021 - 50861228
Alignment:
| Q |
8 |
attacatcctttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| || | |||||||| |||||||||||| ||||||||| | |
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|
| T |
50861021 |
attacatcctttgcttccaactcctctagaacgggacaaccagatagaagtgtcgtgatgtaccaataatatgtgaaactgacagattctaagtgaagga |
50861120 |
T |
|
| Q |
108 |
cttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaagg |
207 |
Q |
| |
|
|||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||| ||||||| ||||||| | |||||||| |
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|
| T |
50861121 |
cttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttgggtcagggttttggtagttaggatgaaagaagg |
50861217 |
T |
|
| Q |
208 |
caatgtggttt |
218 |
Q |
| |
|
|| | |||||| |
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|
| T |
50861218 |
cagtatggttt |
50861228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 49857434 - 49857591
Alignment:
| Q |
17 |
tttgcttccaactcctctagaatgggacaaccagatagaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcg |
116 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| |||||| ||||| || |||||||| ||| ||| |||| |||||||| | ||| |||| |
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|
| T |
49857434 |
tttgcttccaactcttgtagaatgggacatccagataaaagttttctgatatgtccataatatgtgaaacagacggattccaagtgaaggattttgagcg |
49857533 |
T |
|
| Q |
117 |
agggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggac |
174 |
Q |
| |
|
| |||||||| || |||||| |||| | ||||||||||| |||||||||||||||||| |
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|
| T |
49857534 |
acggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaatttgaggac |
49857591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 49868709 - 49868793
Alignment:
| Q |
176 |
gtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctc |
260 |
Q |
| |
|
|||||||||||| |||| ||||| |||| ||||||||| |||||||| | | |||||||||||||| ||||||||| |||||||| |
|
|
| T |
49868709 |
gtcaaggttttggtagtaagaacgaaagtaggcaatgtagttttggagtaaaggcagagatcgatggttaggtttttaactcctc |
49868793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 49760622 - 49760738
Alignment:
| Q |
55 |
aagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgtt |
154 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||| || |||||||| |||| ||||| |||||||| ||| | |||| || | |||||||| |
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|
| T |
49760622 |
aagtttcaagatatattcataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaa---ctccagtcaatgtt |
49760718 |
T |
|
| Q |
155 |
accctcttcaatttgaggac |
174 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
49760719 |
atcctcttcaatttgaggac |
49760738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 31211027 - 31210971
Alignment:
| Q |
151 |
tgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaagg |
207 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| || ||||||| |||||||| |
|
|
| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaaccaaagaagg |
31210971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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