View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18182_low_13 (Length: 267)
Name: NF18182_low_13
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 15168536 - 15168703
Alignment:
| Q |
94 |
tatgcaggtggatgtagctattcatgctgttgataaaatgtgtgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctcta |
193 |
Q |
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| T |
15168536 |
tatgcaggtggatgtagctattcatgctgttgataaaatgtgtgttgataaaatgtgtgaagcaggctttacgctctctactcatgtaatgcaatctcta |
15168635 |
T |
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| Q |
194 |
ctagagacttgctcggaaactaatcaacattttcaggtac--tatatatcttacgtaaagcatttaat |
259 |
Q |
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| T |
15168636 |
ctagagacttgcttggaaactaatcaacattttcgggtactatatatatcttacgtaaagcatttaat |
15168703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 15173332 - 15173449
Alignment:
| Q |
136 |
tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
15173332 |
tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctgtattagagacttgctcggaaactgatcaacaatttcgggtacta |
15173431 |
T |
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| Q |
236 |
tatatcttacgtaaagca |
253 |
Q |
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||| |||||||||||||| |
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| T |
15173432 |
tatgtcttacgtaaagca |
15173449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 8492759 - 8492642
Alignment:
| Q |
136 |
tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta |
235 |
Q |
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| T |
8492759 |
tgttgataaaatgtgtgaagcatactttatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatcaaaattttcaggtacta |
8492660 |
T |
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| Q |
236 |
tatatcttacgtaaagca |
253 |
Q |
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||||||||||||| |||| |
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| T |
8492659 |
tatatcttacgtagagca |
8492642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 248
Target Start/End: Complemental strand, 8519330 - 8519220
Alignment:
| Q |
138 |
ttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactata |
237 |
Q |
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| T |
8519330 |
ttgataaaatgtgtgaagcatactttatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatcaagattttcaggtactata |
8519231 |
T |
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| Q |
238 |
tatcttacgta |
248 |
Q |
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||||||||||| |
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| T |
8519230 |
tatcttacgta |
8519220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 253
Target Start/End: Original strand, 1523574 - 1523691
Alignment:
| Q |
136 |
tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta |
235 |
Q |
| |
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|||||||||||||||||||||| || || || ||| |||||||||||||||||| || ||||||||||||| |||||||||| | |||||||||||||| |
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| T |
1523574 |
tgttgataaaatgtgtgaagcattctgtatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatctagattttcaggtacta |
1523673 |
T |
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| Q |
236 |
tatatcttacgtaaagca |
253 |
Q |
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||||||||||| |||||| |
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| T |
1523674 |
tatatcttacgaaaagca |
1523691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 55809280 - 55809173
Alignment:
| Q |
136 |
tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta |
235 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||| ||||| |||||||||||| ||||||| |
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| T |
55809280 |
tgttgatgaaatgtctgaagcaggctttacgctctctagtcatgcaatgcaatctttattagagacttgttcgaaaactgatcaacattttcgggtacta |
55809181 |
T |
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| Q |
236 |
tatatctt |
243 |
Q |
| |
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|||||||| |
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| T |
55809180 |
tatatctt |
55809173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 55805952 - 55805854
Alignment:
| Q |
145 |
aatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactatatatctt |
243 |
Q |
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||||| |||||||||| |||||||||||||||||| |||||||||| || |||||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
55805952 |
aatgtctgaagcaggccttacgctctctagtcatgcaatgcaatctttattagagacttgttcggaaactgatcaacattttcgggtactatatatctt |
55805854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 29709698 - 29709796
Alignment:
| Q |
145 |
aatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactatatatctt |
243 |
Q |
| |
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||||| |||||||||| |||||||||||||||||| |||||||||| || |||||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
29709698 |
aatgtctgaagcaggccttacgctctctagtcatgcaatgcaatctttattagagacttgttcggaaactgatcaacattttcgggtactatatatctt |
29709796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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