View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18182_low_14 (Length: 258)
Name: NF18182_low_14
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 19775189 - 19774956
Alignment:
| Q |
1 |
ttatcttttaccacctgagttggtggaggtctataaaccgagttgtaattttgttagtgacagaagtacggccatcgtgatattatcctcttcatagtgg |
100 |
Q |
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| T |
19775189 |
ttatcttttgccacctgagttggtggaggtctataaaccgagttgtaattttgttagttacagaagtacggccatcgtgatattatcctcttcatagtgg |
19775090 |
T |
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| Q |
101 |
agttgatatgttttggtggtagtattactatggtggtagtattactatttttgtcccaaccaagatgtttgagaacttatttattgttaacttgagttgg |
200 |
Q |
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| T |
19775089 |
agttgatatgttttggtggtagtatta-----------------ctatttttgtcccaaccaagatgtttgagaacttatttattgttaacttgagctgg |
19775007 |
T |
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| Q |
201 |
ttgcattcatgatagatgctgctttaaaaatgagaagtaatgaagtataat |
251 |
Q |
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| T |
19775006 |
ttgcattcatgatagatgctgcttaaaaaatgagaagtaatgaagtataat |
19774956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 19745202 - 19745127
Alignment:
| Q |
179 |
atttattgttaacttgagttggttgcattcatgatagatgctgctttaaaaatgagaagtaatgaagtataattta |
254 |
Q |
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| T |
19745202 |
attttttggtaacttgagttggttgcattcatgatagatgctgcttaaaaaatgagaagtaatgaagtataattta |
19745127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 44424792 - 44424868
Alignment:
| Q |
155 |
cccaaccaagatgtttgagaacttatttattgttaacttgagttggttgcattcatgatagatgctgctttaaaaat |
231 |
Q |
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| T |
44424792 |
cccaacccagatgtttgaggcctgatttattgttaacttgaattgattgtgttcatgatagatgctgctgtaaaaat |
44424868 |
T |
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