View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18182_low_16 (Length: 230)
Name: NF18182_low_16
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_low_16 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 51386780 - 51386874
Alignment:
| Q |
14 |
caaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcattcttttctggtaaatat |
108 |
Q |
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| T |
51386780 |
caaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcattcttttctagtaaatat |
51386874 |
T |
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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 14174947 - 14175024
Alignment:
| Q |
14 |
caaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat |
91 |
Q |
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| T |
14174947 |
caaatgagaagaaggaatgtaaatattacctgtgaaaaaattgaaccatgtcgacggaaccttcactgctgcaatcat |
14175024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 952391 - 952468
Alignment:
| Q |
14 |
caaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat |
91 |
Q |
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| T |
952391 |
caaatgagaagaaggaatgtaaatattacctgtgaaaagattgaaccatgtcggcggaatcttcactgctgcaatcat |
952468 |
T |
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Target: scaffold0007 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 258056 - 257984
Alignment:
| Q |
19 |
gagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat |
91 |
Q |
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| T |
258056 |
gagaagaaggaatgtaaatatcacctgtgaaaaaattaaaccatgtcggcggaaccttcactgctgcaatcat |
257984 |
T |
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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 11637602 - 11637664
Alignment:
| Q |
29 |
aatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat |
91 |
Q |
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| T |
11637602 |
aatgtaaatattacctgtgaaaaaattgaaccatgtcggcgtaaccttcactgctgcaatcat |
11637664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 40723090 - 40723021
Alignment:
| Q |
19 |
gagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggc-ggaaccttcactgctgcaa |
87 |
Q |
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| T |
40723090 |
gagaagaaggaatgtaaatattacctgtgaaaaaattaaaccatgtcggcagaaaccttcactgctgcaa |
40723021 |
T |
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