View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18182_low_3 (Length: 433)
Name: NF18182_low_3
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_low_3 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 164 - 416
Target Start/End: Complemental strand, 1739398 - 1739146
Alignment:
| Q |
164 |
atgattaaaggatactagttactagttaggttaactaagcaaatcaaggataataattaaaagacacaaa-ttgtgaggcagaagggcatcccaaaatat |
262 |
Q |
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| T |
1739398 |
atgattaaaggatactagttactagtcaggt-aactaagcaaatcaaggatgataattaaaagacaaattgttgtgaggcataagggcatcccaaaacac |
1739300 |
T |
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| Q |
263 |
atgggatgccttaagtatgttcggtaagggcaggcaaatggggcgccatttacgacttattagtctaccttatcgattggcaaccatctgagtacgctca |
362 |
Q |
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| T |
1739299 |
atgggatgtcttaagtatgttcgataagtgcaggtaaatggggcgtcatttatgatttattagtctaacttatcggttggcaaccatctaagtacactca |
1739200 |
T |
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| Q |
363 |
cactcgggtggacttttgcaatacgcacatataactaaatgatgagaatacctt |
416 |
Q |
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| T |
1739199 |
tgctcgggtggacttttgcaatacgcacatataactaaatgatgataatacctt |
1739146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 127 - 421
Target Start/End: Complemental strand, 66851 - 66555
Alignment:
| Q |
127 |
cattataacctactgctatatctattattacttac-agatgattaaaggatactagttactagttaggttaactaagcaaatcaaggataataattaaaa |
225 |
Q |
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| T |
66851 |
cattataacctactgctatatatattactacttatgaaattatcaaaggttactagttcctaatttaggtaacgaagtaaattaaggatgataattaaga |
66752 |
T |
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| Q |
226 |
gacacaaattgtgaggcagaagggcatc-ccaaaatatatgggatgccttaagtatgttcggtaagggcaggcaaatggggcgccatttacgacttatta |
324 |
Q |
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| T |
66751 |
gacacaaattatgaggcagaagggtatttccaaaacacatgggatatcttaaatatgtttggtaagggcaggtaaatggggcgccatttacgacttatta |
66652 |
T |
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| Q |
325 |
gtctaccttatcgattggcaaccatctgagtacgctcacactcgggtggacttttgcaatacgcacatataactaaatgatgagaataccttgatga |
421 |
Q |
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| T |
66651 |
gtctaccttaccggttgacaaccacctaagtacattcacgtttgggtggacttttgcaatacacacatataagtaaatgatgtgaataccttaatga |
66555 |
T |
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