View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18182_low_6 (Length: 391)
Name: NF18182_low_6
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 31201690 - 31202055
Alignment:
| Q |
17 |
aatatattattagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201690 |
aatatattattagttgcctctgcaggtaatgaaggaccaaccggtggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattag |
31201789 |
T |
|
| Q |
117 |
atagagacttcagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaatattctgattattannnnnnngacaaatttattgttatta |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31201790 |
atagagacttcagcagtaccataaccattggtaaccaaacaatcagggtatcattcttaatattctgattattatttttttgacaaatttattgttatta |
31201889 |
T |
|
| Q |
217 |
ttgctgttgattcattattatactataacttttagcgacaattaacaagtgatggtatatgtcatcttgaatctcattattcctcttcttattgttgtaa |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201890 |
ttgctgttgattcattattatactataacttttagcgacaattaacaagtgatggtatatgtcatcttgaatctcattattcctcttcttattgttgtaa |
31201989 |
T |
|
| Q |
317 |
taattttttactcttattgctgtgttattattaagttataatacttaattttgaattctagtatta |
382 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31201990 |
taattttttactcttattgttgtgttattattaagttataatacttaattttgaattctattatta |
31202055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 31063478 - 31063256
Alignment:
| Q |
17 |
aatatattattagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattag |
116 |
Q |
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||||||||||||||||| ||||| || ||||||||||| ||| |||||||||||| ||||| ||||| |||||||||||| |||||||||||||| | | |
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| T |
31063478 |
aatatattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccttgggtattcacagttgctgctagtacaattg |
31063379 |
T |
|
| Q |
117 |
atagagacttcagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaatattctgattattannnnnnngacaaatttattgt--tat |
214 |
Q |
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| |||||||||||||||||||||||||||||| || ||| ||| ||||| |||||||||||||||||| || |||| ||||||||| ||| |
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| T |
31063378 |
acagagacttcagcagtaccataaccattggtgaccaaataattagggt---attcttaatattctgatttttttctttttgacatatttattgtgatat |
31063282 |
T |
|
| Q |
215 |
tattgctgttgattcattattatact |
240 |
Q |
| |
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|||||||||| ||| ||||||||||| |
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| T |
31063281 |
tattgctgttaatttattattatact |
31063256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 31108565 - 31108405
Alignment:
| Q |
17 |
aatatattattagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattag |
116 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||| ||| |||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||| |
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|
| T |
31108565 |
aatatattattagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccatgggtgttcactgttgctgctagtacattag |
31108466 |
T |
|
| Q |
117 |
atagagacttcagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaat |
177 |
Q |
| |
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| ||||||||||||||| ||| |||||||||||||||||| ||| ||||| || |||||| |
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|
| T |
31108465 |
acagagacttcagcagtgtcatgaccattggtaacaaaacactcacggtattatccttaat |
31108405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 31051010 - 31050864
Alignment:
| Q |
20 |
atattattagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattagata |
119 |
Q |
| |
|
|||||||||||||| ||||| || |||| ||||||||| |||||||||| ||||| ||||| ||||| ||||| |||||||||||||| | |||| |
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| T |
31051010 |
atattattagttgcatctgctggaaatggtggaccaacccctggaagtgttactaatgttgctccttgggtgttcactgttgctgctagtacaattgata |
31050911 |
T |
|
| Q |
120 |
gagacttcagcagtaccataaccattggtaacaaaacaatcagggta |
166 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| ||| |||| |
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|
| T |
31050910 |
gagacttcagcagtactataaccattggtaacaaaacagtcacggta |
31050864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 31146315 - 31146156
Alignment:
| Q |
17 |
aatatattattagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattag |
116 |
Q |
| |
|
||||||||||||||||| || || || ||||||||||| ||| |||||||||| ||||| ||||||||||| ||||| |||||||||||||||||| |
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| T |
31146315 |
aatatattattagttgcatcggctggaaatgaaggacctacccctggaagtgttactaatgttgctccatgggtgttcactgttgctgctagtacattag |
31146216 |
T |
|
| Q |
117 |
atagagacttcagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaa |
176 |
Q |
| |
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| ||||||||||||||| ||| || ||| |||||||||| ||| |||||||| ||||| |
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| T |
31146215 |
acagagacttcagcagtgtcatgactattaataacaaaacactcacggtatcatccttaa |
31146156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 31164141 - 31163982
Alignment:
| Q |
17 |
aatatattattagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattag |
116 |
Q |
| |
|
||||||||||||||||| || || || ||||||||||| ||| |||||||||| ||||| ||||||||||| ||||| |||||||||||||||||| |
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| T |
31164141 |
aatatattattagttgcatcggctggaaatgaaggacctacccctggaagtgttactaatgttgctccatgggtgttcactgttgctgctagtacattag |
31164042 |
T |
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| Q |
117 |
atagagacttcagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaa |
176 |
Q |
| |
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| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||| ||||| |
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| T |
31164041 |
acagagacttcagcagtgtcatgaccattaataacagaacactcacggtatcatccttaa |
31163982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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