View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18182_low_9 (Length: 370)
Name: NF18182_low_9
Description: NF18182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18182_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 2223778 - 2223448
Alignment:
| Q |
18 |
gcttcaatcctttctctttcatccggaagatctggctgatcgatcatcattaaataataataattcagccaaaacaaagtgtttgatatggtaccaaaag |
117 |
Q |
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| T |
2223778 |
gcttcaatcctttctctttcatccggaagatctggctgatcgatcatcattaaataataataatt-----------aattgttggatatggtaccaaaag |
2223690 |
T |
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| Q |
118 |
cagttcaaataccataaatgtattttgcttcttaattnnnnnnnnnncaaactattattctagttaattacttgttagataagcaatatgcatatataca |
217 |
Q |
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| T |
2223689 |
cagttcaaataccataaatgtattttgcttcttaattaaaaaaaaaacaaaccattattctatttaattacttgttagataagcaatatgcatatataca |
2223590 |
T |
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| Q |
218 |
tgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgtttagtttgcttaattgtaagttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2223589 |
tgtatgatatatgactaactaaactaattaaccaattcggtgtacatattttctttatgagaattaagtgtacatgtttag-ttgcttaattgtaagttt |
2223491 |
T |
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| Q |
318 |
ctttatatctcatgagtcaccattaattaaccatcaccctatg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2223490 |
ctttatatctcatgagtcaccattaattaaccatcaccttatg |
2223448 |
T |
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