View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18183_low_1 (Length: 541)
Name: NF18183_low_1
Description: NF18183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18183_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Complemental strand, 8259029 - 8258514
Alignment:
| Q |
12 |
aacctgtgaccaacatcaaaaagtgtgtactgtaggtagaatttcgctagagcagcaaaaccgaatattcccaaacatagctttgaaaaggacaaacgaa |
111 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259029 |
aacctgtgaccaagatcaaaaagtgtgtactgtaggtagaatttcgctagagcagcaaaaccgaatattcccaaacatagctttgaaaaggacaaacgaa |
8258930 |
T |
|
| Q |
112 |
gcaacatgtacgagattaacaagtgtccaaagcagccacaactgannnnnnnncaaagtggtcccatttaggttctgcttggtcgccaagcaatttgact |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258929 |
gcaacatgtacgagattaacaagtgtccaaagcagccacaaatgaatttttttcaaagtggtcccatttaggttctgcttggtcgccaagcaatttgact |
8258830 |
T |
|
| Q |
212 |
atcatcatatctcatatgatatgaaatgataactctataaatagatcaagttattaattacatgaagttaaacccacaactaaatcatttcagctttgca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8258829 |
atcatcatatctcatatgatatgaaatgataactctataaatagatcaagttattaattacatgaagttcaacccacaactaaatcatttcagctttgca |
8258730 |
T |
|
| Q |
312 |
cacttacataaacaaaaaacccacttcaaagtgcaaattaaatcactt-ttttatggctttgatttcatccattttaagttgctttggccattcttcaaa |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258729 |
cacttacataaacaaaaaacccacttcaaagtgcaaattaaatcactttttttatggctttgatttcatccattttaagttgctttggccattcttcaaa |
8258630 |
T |
|
| Q |
411 |
ctcatcatctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaaggaagctcca |
510 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8258629 |
ctcatcatctcaagtttctgattatgatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaagggagctcca |
8258530 |
T |
|
| Q |
511 |
attgtagtatatcatt |
526 |
Q |
| |
|
|||||||||||||||| |
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| T |
8258529 |
attgtagtatatcatt |
8258514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 165 - 526
Target Start/End: Complemental strand, 8265949 - 8265587
Alignment:
| Q |
165 |
caaagtggtcccatttaggttctgcttggtcgccaagcaatttgactatcatca-----tatctcatatgatatgaaatgataactctataaatagatca |
259 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
8265949 |
caaagtggtcccatttatgttctccttggtcgccaagcaatttgactatcatcccatcctatctcatatgatatgatatgatg--tctataaatggatca |
8265852 |
T |
|
| Q |
260 |
agttattaattacatgaagttaaacccacaactaaatcatttcagctttgcacacttacataaacaaaaaacccacttcaaagtgcaaattaaatcactt |
359 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8265851 |
agtta---attacatgaagttcaacccacaactaaatcatttcagctttccacacttacataaacaagaaacccacttcaaagtgcaaattaaatcactt |
8265755 |
T |
|
| Q |
360 |
tttt-atggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgatttagatgaaaaatcatctaaattgaa |
458 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
8265754 |
tttttatggctttgatttcatccttcttaagttgctttggccattctttagactcatcgtctcaagtttctgattatgatgaaaaatcatctaaattgaa |
8265655 |
T |
|
| Q |
459 |
atcttcatctttagagaaacaaaagagtaaggaaaaatcaaaggaagctccaattgtagtatatcatt |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
8265654 |
atcttcatctttagagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatt |
8265587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 165 - 518
Target Start/End: Complemental strand, 8260966 - 8260629
Alignment:
| Q |
165 |
caaagtggtcccatttaggttctgcttggtcgccaagcaatttgactatcatcatatctcatatgatatgaaatgataactctataaatagatcaagtta |
264 |
Q |
| |
|
|||||||||||| |||| ||| | ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
8260966 |
caaagtggtccc-tttatgttttccttggtcaccaagcaatttgactattatcatatctcatatgatat------------ctataaatagatcaagtta |
8260880 |
T |
|
| Q |
265 |
ttaattacatgaagttaaacccacaactaaatcatttcagctttgcacacttacataaacaaaaaacccacttcaaagtgcaaattaaatcactttttta |
364 |
Q |
| |
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| ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||| | |
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| T |
8260879 |
---actacatgaagttcaacctacaactaaatcatttcagctttccacacttacataaacagaaaaccctcttcaaagtgcaaattaaatcactttttga |
8260783 |
T |
|
| Q |
365 |
tggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttc |
464 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8260782 |
tggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgatgaaaaatcatctaaattgaaatcttc |
8260683 |
T |
|
| Q |
465 |
atctttagagaaacaaaagagtaaggaaaaatcaaaggaagctccaattgtagt |
518 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| ||||||||||||||| |
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| T |
8260682 |
atctttagagaaacaaaagagcaaagaaaaatcaaagagagctccaattgtagt |
8260629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 341 - 518
Target Start/End: Complemental strand, 8352964 - 8352787
Alignment:
| Q |
341 |
agtgcaaattaaatcacttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgatttagatga |
440 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||| |||| | ||||||||| | |||||| |||||||| |||||||||| ||||| ||||| |
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|
| T |
8352964 |
agtgcaaaccaaatcactttttgatggctttgatttcatcatttttcaattgctttggtccttcttcgaactcatcttctcaagtttatgattatgatga |
8352865 |
T |
|
| Q |
441 |
aaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaaggaagctccaattgtagt |
518 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||| ||| |||||| ||||||||||| || | |||| |||||||||| |
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|
| T |
8352864 |
aaaatcatctcaatcgaaatcttcatcttcagaaaaattaaagagaaaggaaaaatctaatggagcttcaattgtagt |
8352787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 8356482 - 8356354
Alignment:
| Q |
390 |
ttgctttggccattcttcaaactcatcatctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaag |
489 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||| | | |||| |||||| || ||||||||||| ||| |||||||| |||||| ||| |
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|
| T |
8356482 |
ttgctttggtctctcttcaaactcatcatctcaagtttctgattatgctcaaaattcatctcaaatgaaatcttcaacttcagagaaaccaaagagcaag |
8356383 |
T |
|
| Q |
490 |
gaaaaatcaaaggaagctccaattgtagt |
518 |
Q |
| |
|
|||||||||| || ||||||||||||||| |
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|
| T |
8356382 |
gaaaaatcaatgggagctccaattgtagt |
8356354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 403 - 518
Target Start/End: Complemental strand, 8360642 - 8360527
Alignment:
| Q |
403 |
tcttcaaactcatcatctcaagtttctgatttagatgaaaaatcatctaaattgaaatcttcatctttagagaaacaaaagagtaaggaaaaatcaaagg |
502 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||| |||||| || ||||||||||| ||| |||||||| ||||| ||||||||||||| | |
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|
| T |
8360642 |
tcttcaaacttatcatctcaagtttctgattatgttgaaaattcatctcaaatgaaatcttcaacttcagagaaaccaaagatcaaggaaaaatcaatag |
8360543 |
T |
|
| Q |
503 |
aagctccaattgtagt |
518 |
Q |
| |
|
||||||||||||||| |
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|
| T |
8360542 |
gagctccaattgtagt |
8360527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 8350220 - 8350129
Alignment:
| Q |
341 |
agtgcaaattaaatcacttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgat |
432 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | || | ||| ||||| | ||||||||||||||| ||||||||||||||| |
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|
| T |
8350220 |
agtgcaaattaaatcactttttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat |
8350129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 8253043 - 8252975
Alignment:
| Q |
364 |
atggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgat |
432 |
Q |
| |
|
||||||||||||||||| | || | ||| ||||| | ||||||||||||||| ||||||||||||||| |
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|
| T |
8253043 |
atggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat |
8252975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 514
Target Start/End: Complemental strand, 8252954 - 8252911
Alignment:
| Q |
471 |
agagaaacaaaagagtaaggaaaaatcaaaggaagctccaattg |
514 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||||||||| |
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|
| T |
8252954 |
agagaaaccaaagaggaaggaaaaatcaaagggagctccaattg |
8252911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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