View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18183_low_2 (Length: 460)
Name: NF18183_low_2
Description: NF18183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18183_low_2 |
 | |
|
| [»] chr3 (21 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 680044 - 679585
Alignment:
| Q |
1 |
atctccgccgccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattaccaacttcgatgcctctgtaagnnnnn |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
680044 |
atctccgccaccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattaccaacttcgatgcctctgtaagttttt |
679945 |
T |
|
| Q |
101 |
nnattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679944 |
ttattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgag |
679845 |
T |
|
| Q |
201 |
ttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctcctattattcttacaatttgaggta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
679844 |
ttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggta |
679745 |
T |
|
| Q |
301 |
actttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgtt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
679744 |
actttgtggacgtaatgtgctcttgcgatggcatcttttgctgaatgctaaaagctggttcttatttgttgtggaatccttccgttagaaagtataagtt |
679645 |
T |
|
| Q |
401 |
acttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcat |
460 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679644 |
actccctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcat |
679585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 747967 - 747503
Alignment:
| Q |
1 |
atctccgccgccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaag |
95 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
747967 |
atctccgccgccacttcccactcttccattcgatgttttccctgagtttctcggtaggcttcccatcaaattactcgtacaacttcgatgcctctgtaag |
747868 |
T |
|
| Q |
96 |
nnnnnnnattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttgg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
747867 |
tttttttattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccaccacctcatgataacctcttggaacaacttgg |
747768 |
T |
|
| Q |
196 |
ctgagttagttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctcctattattcttacaatttg |
295 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||| || |||||||||| | |
|
|
| T |
747767 |
ctgagttagttgagtatgtttctccaatcccctcggttttatctacttctatcgttgttacacatacacaactttaccctcctaatactcttacaattcg |
747668 |
T |
|
| Q |
296 |
aggtaactttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtat |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
747667 |
aggtaactttgtggacgtaatgtgatcttgcgatggcatcttttgctgcatgctaaaagctggttcatatttgttgtggaatccttccattagaaagtat |
747568 |
T |
|
| Q |
396 |
acgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcat |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
747567 |
acgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcat |
747503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 103 - 415
Target Start/End: Complemental strand, 9595361 - 9595049
Alignment:
| Q |
103 |
attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagtt |
202 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||||| ||||||||||| ||||| ||||||||| ||||||||||| ||||| ||||||||||||||| || |
|
|
| T |
9595361 |
attctcttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccaccacctcatgatagcctctatgaacaacttggctgattt |
9595262 |
T |
|
| Q |
203 |
agttgagtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctcctattattcttacaatttgaggtaac |
302 |
Q |
| |
|
|||| |||||||||||||||| ||| |||| || ||||||||| |||||||||| ||||| ||||||||||||| || ||| |||| | || ||| |
|
|
| T |
9595261 |
agttctatatgattctccaatccactcagttttttctacttctaccattgttacacagacacaactttaccctcctaatactctcacaaatggatctaaa |
9595162 |
T |
|
| Q |
303 |
tttgtggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttac |
402 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| ||||| || | || || ||||||||||| | |||||||| |||||||||||||| | || |||| |
|
|
| T |
9595161 |
tacgtggacgtattgtgctcttgcgatggcattttttgttgttttctcaagcctggttcttatgttttgtggaacccttccattagaaaatttaagttat |
9595062 |
T |
|
| Q |
403 |
ttcctcctttgga |
415 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
9595061 |
tgcctcctttgga |
9595049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 2491317 - 2491726
Alignment:
| Q |
14 |
cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc |
108 |
Q |
| |
|
||||| ||||||| || |||||||| ||||||||||| ||||| |||| | ||||||| || ||||||||||| |||||| ||||| |
|
|
| T |
2491317 |
cttccaactcttccttttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagtttttcaattctt |
2491416 |
T |
|
| Q |
109 |
ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttga |
208 |
Q |
| |
|
| ||| ||||||| | ||||||||| ||||| |||||||| ||||| ||||||||| |||||||| ||||||| |||||||||| |||||| ||| | |
|
|
| T |
2491417 |
taatttctgatcctaaattcgcaaaaaagcatcttcaattgtcaacaaagcgccaccacctcatggtaacctcaaaaaacaacttgggtgagttggttca |
2491516 |
T |
|
| Q |
209 |
gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctcctattattcttacaatttgaggtaactttgtg |
308 |
Q |
| |
|
||||||| ||||| |||||| |||| || |||||||||||| ||||||| || || ||||||||||||| || ||| |||| | || ||| ||| || |
|
|
| T |
2491517 |
tcatgattccccaataccctcgcttttttctacttctaccgttattacacagacccaactttaccctcctactaatctcacaaatggacataaatttatg |
2491616 |
T |
|
| Q |
309 |
gacgtaatgtgctcttgcgatggcatcttttgctgc---atgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttc |
405 |
Q |
| |
|
|||| ||||| ||| |||||||||||||| ||| |||| || | | ||||| ||| ||||||| |||||||||||||||| || |||| | | |
|
|
| T |
2491617 |
ttggtaaggtgctattgtgatggcatcttttgttgcgtggtgcttaatggcgtttctttttttctgtggaacccttccattagaaagtttaagttattgc |
2491716 |
T |
|
| Q |
406 |
ctcctttgga |
415 |
Q |
| |
|
|||||||||| |
|
|
| T |
2491717 |
ctcctttgga |
2491726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 359 - 460
Target Start/End: Original strand, 2501751 - 2501852
Alignment:
| Q |
359 |
ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttc |
458 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||| || |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2501751 |
ttcttatttcttgtggaacccttccattacaaagtttaagttattgcctcctttggagaatcacgaatggacatcactaagctttggatatgatcatttc |
2501850 |
T |
|
| Q |
459 |
at |
460 |
Q |
| |
|
|| |
|
|
| T |
2501851 |
at |
2501852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 291
Target Start/End: Complemental strand, 9562672 - 9562507
Alignment:
| Q |
129 |
gcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttg---gctgagttagttgagtatgattctccaatcc |
225 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||| || ||||||||||||||| | | | |||||| ||| || |||||| ||||||| |
|
|
| T |
9562672 |
gcaaagaagcaccttcaattgtcaactaagcgccaccacctcttggtaacctcttggaacatttcgcgtggtgagtttgttcagcatgatttcccaatcc |
9562573 |
T |
|
| Q |
226 |
cctcgattttatcaacttctaccgttgttacacatacacagctttaccctcctattattcttacaa |
291 |
Q |
| |
|
||| | |||| || |||||||||| ||||||||| ||||| |||||| |||||| |||||| |||| |
|
|
| T |
9562572 |
ccttggttttttctacttctaccgctgttacacagacacaactttacgctcctaatattctcacaa |
9562507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 457
Target Start/End: Complemental strand, 2659752 - 2659505
Alignment:
| Q |
213 |
gattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctcctattattcttacaatttgaggtaactttgtggacg |
312 |
Q |
| |
|
|||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||| ||||| || ||| |||| | || | ||| | ||| |
|
|
| T |
2659752 |
gattctccaatcccttcaattttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacatcactgcatcgacc |
2659653 |
T |
|
| Q |
313 |
taatgt---gctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcc |
409 |
Q |
| |
|
| ||| |||||||||||||||| ||||| | | ||| || |||||||||||| || ||||| |||||||||||||||| || |||| | ||||| |
|
|
| T |
2659652 |
tgatgatgagctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttatggaacccttccattagaaagtttaagttattgcctcc |
2659553 |
T |
|
| Q |
410 |
tttggagaatcacatatggacatcactaagctttggatatgatcattt |
457 |
Q |
| |
|
|||| |||||||| |||| ||| |||||||||||||||||||||||| |
|
|
| T |
2659552 |
tttgcggaatcacaaatggtcattactaagctttggatatgatcattt |
2659505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 2474346 - 2474749
Alignment:
| Q |
13 |
acttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattacc-----aacttcgatgcctctgtaagnnnnnnnattct |
107 |
Q |
| |
|
|||||||||||||| ||| ||| |||| |||||||||||| ||||| ||||| |||||||||| | ||||| |||||||||||| ||||| |
|
|
| T |
2474346 |
acttcccactcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattct |
2474445 |
T |
|
| Q |
108 |
cttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttg |
207 |
Q |
| |
|
| ||| | |||| | |||||||||||| |||||||||||||||| ||||||||| |||||||| |||| ||| | ||| |||| | ||||| ||| |
|
|
| T |
2474446 |
ttaatttccaatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccaccacctcatggtaacatctagcaactacttaggtgagtacgttc |
2474545 |
T |
|
| Q |
208 |
agtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctcctattattcttacaatttgaggtaactttgt |
307 |
Q |
| |
|
|||||||||| ||||| |||||| |||| || | |||| | ||| ||| ||||| ||||||||||||| || | | | | || || ||||| | |
|
|
| T |
2474546 |
agtatgattccccaataccctcgcttttttctaagtcta---tcattatacagacacaactttaccctcctaatagtatcaaacttggacataactacgc |
2474642 |
T |
|
| Q |
308 |
ggacgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaagtatacgttacttcct |
407 |
Q |
| |
|
||| |||||||||| ||||||||||||||| ||| ||| |||| ||| |||||||| |||||||| ||||||||| |||| | || |||| | ||| |
|
|
| T |
2474643 |
cttcgtgttgtgctcttgtgatggcatcttttgcggcacgctcaaagatggctcttattt-ttgtggaacccttccattggaaaatttaagttattgcct |
2474741 |
T |
|
| Q |
408 |
cctttgga |
415 |
Q |
| |
|
|||||||| |
|
|
| T |
2474742 |
cctttgga |
2474749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 2475887 - 2476157
Alignment:
| Q |
14 |
cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc |
108 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||||||| |||||| || ||||||||| || ||||| ||||| |||||| |||||| |
|
|
| T |
2475887 |
cttcccactcttccctttgatgtcctgcctgagattctgtttaggttacctgtcaaattactcgtacagcttcggtgcctttgtaagtttttcaattctc |
2475986 |
T |
|
| Q |
109 |
ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaacttggctgagttagttga |
208 |
Q |
| |
|
||||| ||||||| | |||||||||||| ||||||||||| ||||| ||||||||| |||||||| || | | | |||| | |||||||||| |
|
|
| T |
2475987 |
ttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccaccacctcatgcgaaaatgtcgtaacatatcacgtgagttagttct |
2476086 |
T |
|
| Q |
209 |
gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctccta |
279 |
Q |
| |
|
||||||||| |||||||| || | || || ||||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
2476087 |
gtatgattcgccaatcccatccgtattttctacttcaaccgttgttacacagacacaactttaccctccta |
2476157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 755445 - 755292
Alignment:
| Q |
30 |
tcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaac |
124 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||||||| || || || |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
755445 |
tcgatgtcctgcctgagattctttgtaggcttcccatcaaattactcggacagctgcggtgcctctgtaagtctttcaattctcttatttctgatccaaa |
755346 |
T |
|
| Q |
125 |
attcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac |
178 |
Q |
| |
|
||||||||| || || |||||||| ||||| ||||||||| |||||||| |||| |
|
|
| T |
755345 |
attcgcaaaaaaacatcttcaattgtcaacaaagcgccaccacctcatgttaac |
755292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 391
Target Start/End: Original strand, 2635214 - 2635294
Alignment:
| Q |
311 |
cgtaatgtgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattagaaa |
391 |
Q |
| |
|
||||| |||||||||||||||||||||| || | |||| ||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
2635214 |
cgtaacgtgctcttgcgatggcatctttagcggtgtgctcaaagctggttcttattttctgtggaacccttccattagaaa |
2635294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 7335100 - 7334931
Alignment:
| Q |
14 |
cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc |
108 |
Q |
| |
|
||||| ||||||| || |||||||| ||||||||||| ||||| |||| | ||||||| || |||||||| ||||||||| ||||| |
|
|
| T |
7335100 |
cttcctactcttccgtttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattctg |
7335001 |
T |
|
| Q |
109 |
ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac |
178 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||| |||| |
|
|
| T |
7335000 |
ttatctctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccaccacctcatggtaac |
7334931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 9566432 - 9566320
Alignment:
| Q |
228 |
tcgattttatcaacttctaccgttgttacacatacacagctttaccctcctattattcttacaatttgaggtaactttgtggacgtaatgtgctcttgcg |
327 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| ||||| ||||||||||| | || | | | |||| || | |||| ||||||| ||| ||||||||||| |
|
|
| T |
9566432 |
tcgattttatctacttctacggtttttacacagacacaactttaccctcccaatagtatcagaattagacgcaactatgtggacttaacgtgctcttgcg |
9566333 |
T |
|
| Q |
328 |
atggcatcttttg |
340 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9566332 |
atggcatcttttg |
9566320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 9566651 - 9566482
Alignment:
| Q |
14 |
cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc |
108 |
Q |
| |
|
||||| ||||||| |||||||||| | ||||||||||| ||||| ||||||| ||||||| || ||||| |||||||| ||| |||||| |
|
|
| T |
9566651 |
cttcctactcttcccttcgatgtcttgcctgagattctttgtaggcttcccatgaaattactcggacagcttcggtgcctctgcaagtccttcaattctc |
9566552 |
T |
|
| Q |
109 |
ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataac |
178 |
Q |
| |
|
||||| ||||||||| ||||||||| || || |||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
9566551 |
ttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgccatcacctcatgttaac |
9566482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 7443823 - 7443641
Alignment:
| Q |
14 |
cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc |
108 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| | ||| |||| | ||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
7443823 |
cttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctt |
7443724 |
T |
|
| Q |
109 |
ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctcatgataacctcttggaacaac |
191 |
Q |
| |
|
| ||| ||||||| | ||||| ||||||||| ||||||| ||| | |||| ||| ||||||| |||||||| |||||||| |
|
|
| T |
7443723 |
taatttctgatcccaatttcgccaagaagcactttcaattttcagccaagcatcaccgcctcatggtaacctctaggaacaac |
7443641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 7325226 - 7325065
Alignment:
| Q |
14 |
cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc |
108 |
Q |
| |
|
||||| ||||||| ||||||||| | |||||||||||| | ||| |||| | ||||||| || ||||| |||||||||||| ||||| |
|
|
| T |
7325226 |
cttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctgtgaaattactcatacagcttcggtgcctctgtaagttcttcaattctt |
7325127 |
T |
|
| Q |
109 |
ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaacctc |
170 |
Q |
| |
|
| ||| ||||||| || ||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
7325126 |
taatttctgatcccactttcgcaaagaaacatcttcaattatcaactaagcgccaccacctc |
7325065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 2630771 - 2630841
Alignment:
| Q |
209 |
gtatgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctccta |
279 |
Q |
| |
|
|||||||||||||||||| ||| |||| || ||||| ||| ||||| |||| ||||| ||||||||||||| |
|
|
| T |
2630771 |
gtatgattctccaatcccttcgcttttttctacttcaaccattgttgcacaaacacaactttaccctccta |
2630841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 421
Target Start/End: Original strand, 2630909 - 2630971
Alignment:
| Q |
359 |
ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatca |
421 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| || |||| | ||||| ||||| ||||| |
|
|
| T |
2630909 |
ttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccattggaaaatca |
2630971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 7324932 - 7324862
Alignment:
| Q |
318 |
tgctcttgcgatggcatcttttgctgcatgctaaaagctggttcttatttgttgtggaatccttccattag |
388 |
Q |
| |
|
|||||||| |||||||| |||| ||||||| |||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
7324932 |
tgctcttgtgatggcatttttttgggcatgctcaaagttggttcttattatttgtggaacccttccattag |
7324862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 755246 - 755181
Alignment:
| Q |
212 |
tgattctccaatcccctcgattttatcaacttctaccgttgttacacatacacagctttaccctcc |
277 |
Q |
| |
|
|||||| |||||||| || ||||| || |||||||| ||| ||||||| ||||| ||||||||||| |
|
|
| T |
755246 |
tgattccccaatcccatccattttttctacttctactgtttttacacagacacaactttaccctcc |
755181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 2644819 - 2644763
Alignment:
| Q |
359 |
ttcttatttgttgtggaatccttccattagaaagtatacgttacttcctcctttgga |
415 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||| || |||| | ||||||||||| |
|
|
| T |
2644819 |
ttcttatttcttgtggaacccttccgttagaaagtttaagttattgcctcctttgga |
2644763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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