View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18183_low_3 (Length: 218)
Name: NF18183_low_3
Description: NF18183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18183_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 50024098 - 50023921
Alignment:
| Q |
16 |
atgaactattgtcaccacaaaattaaacactagaggtgtttgataataatcatttcgtaattaagtagaggtgttcataaagttttttcaaatgttactt |
115 |
Q |
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| T |
50024098 |
atgaactattgtcaccacaaaattaaaca---------tatgataataatcatttcgtaattaagtagaggtgtttataaagttttttcaaatgttactt |
50024008 |
T |
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| Q |
116 |
gtttgggtttatagtttgtgatatatcaatttgttatggatatcgaccaacggaaattaagttgaatcttgatgaataacaatgagt |
202 |
Q |
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| T |
50024007 |
gtttgggtttatagtttgtgatatatcaatttgttatggatatcgaccaacggaaattaagttgaatcttgatgaataacaacgagt |
50023921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 50031216 - 50031039
Alignment:
| Q |
16 |
atgaactattgtcaccacaaaattaaacactagaggtgtttgataataatcatttcgtaattaagtagaggtgttcataaagttttttcaaatgttactt |
115 |
Q |
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| T |
50031216 |
atgaactattgtcaccacaaaattaaaca---------tatgataataatcatttcgtaattaagtagaggtgtttataaagttttttcaaatgttactt |
50031126 |
T |
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| Q |
116 |
gtttgggtttatagtttgtgatatatcaatttgttatggatatcgaccaacggaaattaagttgaatcttgatgaataacaatgagt |
202 |
Q |
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| T |
50031125 |
gtttgggtttatagtttgtgatatatcaatttgttatggatatcgaccaacggaaattaagttgaatcttgatgaataacaacgagt |
50031039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 44121436 - 44121275
Alignment:
| Q |
44 |
actagaggtgtttgataataatcatttcgtaattaagtagaggtgttcataaagttttttcaaatgttacttgtttgg---gtttatagtttgtgatata |
140 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
44121436 |
actagaggtgtttgataataatcatttcataattaagtagaggtgtttataaagttttttcaaatgttacttgtttggtgggtttatagtttatgatata |
44121337 |
T |
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| Q |
141 |
tcaatttgttatggatatcgaccaacggaaattaagttgaatcttgatgaataacaatgagt |
202 |
Q |
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| T |
44121336 |
tcaatttgttatggatatcaaccaacggaaattaagttgaatcttgatgaataacaatgagt |
44121275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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