View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18184_low_10 (Length: 266)
Name: NF18184_low_10
Description: NF18184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18184_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 25540693 - 25540443
Alignment:
| Q |
1 |
tggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540693 |
tggtttactttcaaatgcatcgagtttcctaagaacacattcatttacctaacatgtacctttcatatacaactatgttgttagaagcaacactgtatca |
25540594 |
T |
|
| Q |
101 |
agttagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540593 |
agttagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaa |
25540494 |
T |
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| Q |
201 |
cgttcctcagtgaaattggttactgatgcgttagctgattactcatatttt |
251 |
Q |
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| T |
25540493 |
cgttcctcagtgaaattggttactgatgcgttagctgattactcatatttt |
25540443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 25517048 - 25517190
Alignment:
| Q |
108 |
agtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcct |
207 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| | ||||||||||| |
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| T |
25517048 |
agtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcct |
25517146 |
T |
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| Q |
208 |
cagtgaaattggttactgatgcgttagctgattactcatatttt |
251 |
Q |
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| T |
25517147 |
cagtgaaattggctgctgatacgttagctgattactcatatttt |
25517190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 25525049 - 25524916
Alignment:
| Q |
104 |
tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt |
203 |
Q |
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|||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||| | | | ||| |||||||||||||| ||||| | |
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| T |
25525049 |
tagtagtcctttggctttgacgatttgagtgctcgcaacaaatgcaactctaggagccgtttt------tttttaatatgatagatggaacaggtaacat |
25524956 |
T |
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| Q |
204 |
tcctcagtgaaattggttactgatgcgttagctgattact |
243 |
Q |
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| T |
25524955 |
tcctcagtgaaattggttgatgatgcgttgactgattact |
25524916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 25534157 - 25534070
Alignment:
| Q |
1 |
tggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
89 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||| |||||||| |||||||||||||||| |
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| T |
25534157 |
tggtttactttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtaccttt-atatacaaatatgttgttagaagca |
25534070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 25516256 - 25516359
Alignment:
| Q |
1 |
tggtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| |||| ||| |||||||||||| ||||||| | ||| |||||| |
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| T |
25516256 |
tggtttactttcaaatgcatcgaggttcctaagaacacatccagctactgaacatgcacctgtcagatacaactatgtagttagaatctacattgtatct |
25516355 |
T |
|
| Q |
101 |
agtt |
104 |
Q |
| |
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|||| |
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|
| T |
25516356 |
agtt |
25516359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 25526153 - 25526068
Alignment:
| Q |
3 |
gtttactttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca |
89 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| |||||||||| |
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| T |
25526153 |
gtttactttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtacc-ttcatatacaaatatgtcgttagaagca |
25526068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 44461068 - 44461024
Alignment:
| Q |
118 |
ctttgaggattcgagtgctcgcaacaaatgcaactctaggagctg |
162 |
Q |
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||||||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
44461068 |
ctttgaggattggagtgcttgcaacaaatgcaactctagcagctg |
44461024 |
T |
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