View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18184_low_5 (Length: 469)
Name: NF18184_low_5
Description: NF18184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18184_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 28707329 - 28706870
Alignment:
| Q |
1 |
ggtgataattggttaccatatcaacaaggtcatagaatttggtccccttaacctccaaattatgttctgtgaaatgtggcagacctaatacatccagatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28707329 |
ggtgataattggttaccatatcaacaaggtcatagaatttggtccccttaacctccaaattatgttctgtgaaatgtggcagacctaatacatccagatc |
28707230 |
T |
|
| Q |
101 |
a---gaaagaatggaattctcaattgattaatgctaccttccttgcttttaaggctcaacaaatcctttaaatccctctttccctaaataatccgcaaga |
197 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28707229 |
atcagaaagaatggaattctcaattgattaatgctaccttccttgcttttaaggctcaacaaatcctttaaatccctctttccctaaataatccgcaaga |
28707130 |
T |
|
| Q |
198 |
tcgcttcatatggggagagaataacgaatgtgaattttctgttaagtctgcttacaaattccaaaaacgaagaaatgagatgctcaactccaatcaatct |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28707129 |
tcgcttcatatggggagagaataacgaatgtgaattttctgttaagtctgcttacaaattccaaaaacgaagaaatgagatgctcaactccaatcaatct |
28707030 |
T |
|
| Q |
298 |
gtcatacctcaagagagtaatgaatggagtaaactatggaagcttaaaactattatgcgtcaaatgcaacttatgtggtgtattctacataaaaggttgc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28707029 |
gtcatacctcaagagagtaatgaatggagtaaactatggaagcttaaaactattatgtgtcaaatgcaacttatgtggtgtattctacataaaaggttgc |
28706930 |
T |
|
| Q |
398 |
cggtaagagagtctctatttaaaaaaggagttaattgttccccgttgtggtgtgtctgtg |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28706929 |
cggtaagagagtctctatttaaaaaaggagttaattgttccccgttgtggtgtgtctgtg |
28706870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 24704351 - 24704233
Alignment:
| Q |
1 |
ggtgataattggttaccatatcaacaaggtcatagaatttggtccccttaacctccaaattatgttctgtgaaatgtggcagacctaatacatccagatc |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| |||||||||||| ||| |||||||||||| | |||| | ||| |||||| | ||||||||| |||||| |
|
|
| T |
24704351 |
ggtgataactggttaccatatcagcaaggtcgtagaatttggtctcctcaacctccaaattgtattctttcaaaagtggca-aactaatacattcagatc |
24704253 |
T |
|
| Q |
101 |
agaaagaatggaattctcaa |
120 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
24704252 |
ggaaagaatagaattctcaa |
24704233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 1171499 - 1171541
Alignment:
| Q |
333 |
atggaagcttaaaactattatgcgtcaaatgcaacttatgtgg |
375 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
1171499 |
atggaagcttaaaacaattctgcgtcatatgcaacttatgtgg |
1171541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University