View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18184_low_6 (Length: 455)
Name: NF18184_low_6
Description: NF18184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18184_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 21 - 442
Target Start/End: Original strand, 14751550 - 14751973
Alignment:
| Q |
21 |
attttcaagagtaatgccaaacacttatgaaaaattgctttattaagaacctatctgatcatttgaaaaccccctaaaaagttcaatgagaactacttga |
120 |
Q |
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| T |
14751550 |
attttcaagagtaatgccaaacacttatgaaaaattgctttattaagaacctatctgatcatttgaaaaccccctaaaaagttcaatgagaactacttga |
14751649 |
T |
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| Q |
121 |
gtacaacaacgtatcttaatttattacttaaatattataatttattacatatcttataactcacatatctcctattttctcagtatatctcatatctatc |
220 |
Q |
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| T |
14751650 |
gtacaacaacgtatcttaatttattacttaaatattataatttattacatatcttataactcacatatctcctattttctcagtatatctcatatctatc |
14751749 |
T |
|
| Q |
221 |
tcattatcaactttctatcactcctctcaaatttattatatcacattaaaatatctctaatcctttaaatatt--nnnnnnnnnnttgtgatcactacat |
318 |
Q |
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| T |
14751750 |
tcattatcaactttctatcactcctctcaaatttattttatcacattaaaatatctctaatcctttaaatattaaaaaaaaaaaattgtgatcactacat |
14751849 |
T |
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| Q |
319 |
agttcgatgctgtgtaatggggcattttcactttggttgttgcagcttagggtttactgtggtttacaatcacgacatagtttgatgcatgtaatggggc |
418 |
Q |
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| T |
14751850 |
agttcgatgcggtgtaatggggcattttcactttggttgttgcagcttagggtttactgtggtttacaatcacgacatagtttgatgcatgtaatggggc |
14751949 |
T |
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| Q |
419 |
cttatcatcaatttgaaaccatac |
442 |
Q |
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| T |
14751950 |
cttatcatcaatttgaaaccatac |
14751973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 14759507 - 14759582
Alignment:
| Q |
170 |
tatcttataactcacatatctcctattttctcagt-at--atctcatatctatctcattatcaactttctatcact |
242 |
Q |
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| T |
14759507 |
tatcttataactcaaatatctcctattttctaagtcattaatctcatatttatcacattatcagctttcgatcact |
14759582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 17569018 - 17568943
Alignment:
| Q |
170 |
tatcttataactcacatatctcctattttctcagt-at--atctcatatctatctcattatcaactttctatcact |
242 |
Q |
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|||||||||||||| |||||||||||||||| ||| || ||||||||| |||| |||||||| ||||| |||||| |
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| T |
17569018 |
tatcttataactcaaatatctcctattttctaagtcattaatctcatatttatcacattatcagctttcgatcact |
17568943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 5038234 - 5038295
Alignment:
| Q |
170 |
tatcttataactcacatatctcctattttctcagtat-atctcatatctatctcattatcaa |
230 |
Q |
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|||||||||| | |||||||| ||||||||| ||| |||||||||||||||||||||||| |
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| T |
5038234 |
tatcttataaattacatatcttctattttctttgtaggatctcatatctatctcattatcaa |
5038295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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