View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18184_low_9 (Length: 278)
Name: NF18184_low_9
Description: NF18184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18184_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 7871687 - 7871428
Alignment:
| Q |
10 |
catcatcaatgatagggtgtaaaggacagcatnnnnnnntgatacataaaagagaggtaggcatgatacagtgaatctatgtgaaagatatataatatgg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7871687 |
catcttcaatgatagggtgtaaaggacagcataaaaaaatgatacataaaagagaggtaggcatgatacagtgaatctatgtgaaagatatataatatgg |
7871588 |
T |
|
| Q |
110 |
ggtaatgtatattttcttggattcatgagttttttccctatgatttagttagtcatggttgtgttgaaatatgctgcatactggtgcagtatcttgtaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7871587 |
ggtaatgtatattttcttggattcatgagttttttccctatgatttagttagtcatggttgtgttgaaatatgctgcatactggtgcagtatcttgtaat |
7871488 |
T |
|
| Q |
210 |
tttggcagtagtggcattctttttacgcgtttttactttggtttacttgtgtgatgatgt |
269 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7871487 |
tttggcagtagtggcattctttttatgcgtttttactttggtttacttgtgtgatgatgt |
7871428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University